PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29912.m005463
Common NameLOC8268312, RCOM_1050490
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 279aa    MW: 30347 Da    PI: 4.6962
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29912.m005463genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-1866116155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  29912.m005463  66 PVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 116
                    68*****998.**********854...59**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-1266116IPR001471AP2/ERF domain
SMARTSM003802.8E-3567130IPR001471AP2/ERF domain
PROSITE profilePS5103223.05167124IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2167125IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-3167125IPR001471AP2/ERF domain
CDDcd000182.77E-3068126No hitNo description
PRINTSPR003674.8E-106879IPR001471AP2/ERF domain
PRINTSPR003674.8E-1090106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MADALRANSN SETESSFNSS SSSSSSSPPP SSPSSSGLSP NPVRKPGPEE NPRKPKRARD  60
SSNKHPVYRG VRMRTWGKWV SEIREPRKKN RIWLGTFSTP EMAARAHDVA ALSIKGNSAI  120
LNFPELAGTL PRPASNSPRD VQAAAAKAAS MDFNIGNDDN SNSNNENDNN HKTSSSSTVT  180
QSSSSSITTA EVTSTSSPYN VATPEELSQI VELPSLGTSF EESPELRDEF VFSDDPWLYN  240
NPAWYEDYCC GGNGYFSDQL SLMPESVINS GFEFFLWGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1958125573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29912.m005463
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514246.10.0ethylene-responsive transcription factor TINY
SwissprotQ9LYD36e-57DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLB9RKK20.0B9RKK2_RICCO; Transcriptional factor TINY, putative
STRINGXP_002514246.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.14e-55ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]