PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29912.m005485
Common NameLOC8268334, RCOM_1051610
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 363aa    MW: 39841.3 Da    PI: 6.7049
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29912.m005485genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000482262641255
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  29912.m005485 226 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 264
                    6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.611214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-6224268No hitNo description
SuperFamilySSF474594.06E-10224274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-7228270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNRGVLQTSP AVEQIIAGNP IWWNINNMRP PTHQQTSPFV PPPNLFPQFI PSSSSNNSSS  60
SSSSSLTIPS WHDNNQEQLP DSWSQLLLGG LVDEDKGNMT SHFQTKKFEN WEEQMLHHQA  120
SSIVSPVVDV KQENSATSYV YGHANSEDFQ TAKPSWSQMI PPPVSSPKSC VTTSFSSNML  180
DFSTNKGDCR HPPPDRSSEC NSTATGGAVK KARVQPSSTQ STFKVRKEKL GDRITALHQL  240
VSPFGKTDTA SVLLEAIGYI RFLQNQIEAL SLPYLGSGSS NMRQQQQSVQ GERNCIFPED  300
PGQLLNDNCI KRKGASDQQD CNEEPKKDLR SRGLCLVPVS CTLQVGSDNG ADYWAPALGG  360
GFR
Cis-element ? help Back to Top
SourceLink
PlantRegMap29912.m005485
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514268.10.0transcription factor bHLH68
SwissprotQ8S3D11e-107BH068_ARATH; Transcription factor bHLH68
TrEMBLB9RKM40.0B9RKM4_RICCO; Transcription factor, putative
STRINGXP_002514268.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-108bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]