PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29912.m005495
Common NameLOC8268344, RCOM_1052210
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family CPP
Protein Properties Length: 601aa    MW: 64665.3 Da    PI: 8.0054
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29912.m005495genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.53.2e-14119158242
            TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                    ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C N+ e+
  29912.m005495 119 RQKQCNCKHSRCLKLYCECFASGTYCDG-CNCVNCYNNVEN 158
                    689*************************.********9875 PP
2TCR50.93.1e-16203242140
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  29912.m005495 203 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 242
                    589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.1E-15118158IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.648119243IPR005172CRC domain
PfamPF036388.6E-11120155IPR005172CRC domain
SMARTSM011148.4E-20203244IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12206241IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MGEGEGNEFP PKKASSSQSE SLDFPTKKLA RQLDFTTQGN NNNNNNNVVL PEHPQSQQQP  60
PATVALPQEP VVAPQQPQAV AIPEAPLLPP QPPVRAIKPE SPKSKPRPNA ELKDGTPKRQ  120
KQCNCKHSRC LKLYCECFAS GTYCDGCNCV NCYNNVENEA ARREAVEATL ERNPNAFRPK  180
IASSPHGTRD SREENGEGLI LGKHNKGCHC KKSGCLKKYC ECFQANILCS ENCKCMDCKN  240
FEGSEERQAL FHGDHTNNMA YIQQAANAAI TGAIGSSGYV SPPISKKRKG QELLFGPTTK  300
DPSFHRLGHF QQAVHIRPST SSSSLSSNPI ARAGSSATLG PSKFTYRSLL ADIIQPQDLK  360
ELCSVLVVLS GEAAKTLAGQ RNATENWVED QTEPSLASSP QERLQSQKGA GAGNSIAHDC  420
SSANQADKTG HGSSSSDGVD VPKGRPMSPG TLALMCDEED TMFMTAASPN GLTGRGCSTT  480
SQFPCGQGMT EIYTEQERIV LTKFRDCLNR LITFGEIKET KCSSFARTEL GNPKDPVSNG  540
TTNARAEVGN QQVPYSNGVG RHVIPPTSKT SQMVGSTVAT SSNDLSRIPT LPQNGDNKPK  600
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-321112522132Protein lin-54 homolog
5fd3_B3e-321112522132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29912.m005495
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142821e-107AC214282.1 Populus trichocarpa clone POP018-K04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514278.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLB9RKN40.0B9RKN4_RICCO; Transcription factor, putative
STRINGXP_002514278.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.10.0Tesmin/TSO1-like CXC domain-containing protein