PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29912.m005554

Common Name

RCOM_1053390

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Trihelix

Protein Properties

Length: 340aa MW: 39174.8 Da PI: 4.2431

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29912.m005554	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.9	2.3e-12	94	176	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e L+e+ ++ +l+r++l+ +W ev++k++e +++r+ qCk+ ++ l+++ykk+k+ +++ + s++p+f++++ 29912.m005554 94 WNDHEKFMLLEVWGDRFLQLGRNSLRSEDWVEVAEKVSElSKVNRNEAQCKQILDVLKRKYKKEKAKCGSG---ANSKWPFFRKMD 176 ***********************************772578**********************97...5568*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.5E-19	92	178	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MDDITHSMNR SRKVPLYTHP VHSQYNYDYI LNDPEEEEGE EELDEENDQE SDDNYSSIRY 60 PKRQRKLKTL ASDYELVPRN SGRLYGNLNI STDWNDHEKF MLLEVWGDRF LQLGRNSLRS 120 EDWVEVAEKV SELSKVNRNE AQCKQILDVL KRKYKKEKAK CGSGANSKWP FFRKMDMLMK 180 QEFGSGGSGS GIGGNGFSLA CGVDSGEFVF MDTNVYLERA NGNDEMRDSP CESEEEDERE 240 GEGCGGHEGV KGLRVLADSV QKFGEIYEKI ESSKREQMLE LERMRVEFQK ELELQKKQIL 300 EKAQAEIAKI RDGDDEEEDE GEEDDDDDDD DDKSAEDVSE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29912.m005554

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015571795.1	1e-176	trihelix transcription factor ASIL2
Refseq	XP_015571796.1	1e-176	trihelix transcription factor ASIL2
TrEMBL	B9RKU2	0.0	B9RKU2_RICCO; Transcription factor, putative
STRING	XP_002514336.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	3e-72	Trihelix family protein

Link Out ? help Back to Top
Phytozome	29912.m005554