PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29917.m001986
Common NameRCOM_1063820
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 162aa    MW: 18477.6 Da    PI: 4.9907
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29917.m001986genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-081543129
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                     +g+WT eEd++l+++++ +G g W++ a+
    29917.m001986 15 KGPWTMEEDLILINYIANHGEGVWNSLAK 43
                     79************************997 PP
2Myb_DNA-binding46.21e-144682846
                     HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     E++l+ ++++++G++ W++Ia++++ gRt++++k++w++
    29917.m001986 46 EQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 82
                     999************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-12644IPR009057Homeodomain-like
PROSITE profilePS5129416.9771088IPR017930Myb domain
SuperFamilySSF466892.11E-181380IPR009057Homeodomain-like
SMARTSM007173.4E-131486IPR001005SANT/Myb domain
PfamPF002498.7E-71543IPR001005SANT/Myb domain
CDDcd001672.44E-111782No hitNo description
PfamPF002491.2E-134582IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-184584IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDKKPINSQD AEVRKGPWTM EEDLILINYI ANHGEGVWNS LAKAAEQLLI MELHAKWGNR  60
WSKIAKHLPG RTDNEIKNYW RTRIQKHIKQ AEACTGSSSS EMNEQGSTSN QISAMMETYS  120
PQSYQGNVQD AFPGANCNLP PEPNDNYWSM EDFWSMQLLN GD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29917.m001986
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346671e-40KM034667.1 Jatropha curcas clone JcMYB047 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576153.11e-113myb-related protein 305 isoform X2
SwissprotP813911e-67MYB05_ANTMA; Myb-related protein 305
TrEMBLB9S6341e-118B9S634_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002521453.11e-119(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.17e-61myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]