PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29917.m002016
Common NameRCOM_1064740
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 413aa    MW: 45961.3 Da    PI: 5.6511
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29917.m002016genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1041.9e-32752171128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tks 80 
                    lp+G++F+P+d el+ e+L++k+   + + +          +++ +i++++P++Lp  +k + ++++fF+++ ++yatg+rk+r+         ++
  29917.m002016  75 LPAGVKFDPSDAELL-EHLAAKCGIGNSKSHAfidefiptLLEDKGICYTHPENLP-GAKIDGSSVHFFHRTINAYATGQRKRRKvhnehgsnEEH 168
                    799************.99***9887774333333455553578889**********.44568899*******************756666665558 PP

            NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+k+v++ +g ++g+kk++v+y  +++  k+ k++Wvmh+y+l
  29917.m002016 169 VRWHKTGKTKPVME-NGIQKGCKKIMVLYksSKKGTKPDKSNWVMHQYHL 217
                    89************.99************4334566777*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-3760236IPR003441NAC domain
PROSITE profilePS5100530.38175236IPR003441NAC domain
PfamPF023652.2E-1376217IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MVLLHLSGLF CCEIKFRVCF CCRAWLIDSK TIASKVKNPT RTSAYQIKDC GANRDCPNCH  60
HRIDNSDVSH DWPGLPAGVK FDPSDAELLE HLAAKCGIGN SKSHAFIDEF IPTLLEDKGI  120
CYTHPENLPG AKIDGSSVHF FHRTINAYAT GQRKRRKVHN EHGSNEEHVR WHKTGKTKPV  180
MENGIQKGCK KIMVLYKSSK KGTKPDKSNW VMHQYHLGTD EDEKEGEYVV SKIFYQQHKQ  240
IDSNDDVPIE DCDVLALQTS PRTPNPNPPN PPRPGKSGAC DDSVDDNILR SCVQVGEYDV  300
PVHAVQPEDD VGYPEWLAGE SQAVENTDFS GIDDSLLCTE IFNSSSLFFN SSGLHNVSYT  360
GIAQSTNQVT GNNNAPCGIA ELENLELDTP PDFTLSDLQI SSQDSIFSWI DRL
Cis-element ? help Back to Top
SourceLink
PlantRegMap29917.m002016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025013527.10.0SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1
TrEMBLB9S6630.0B9S663_RICCO; Uncharacterized protein
STRINGXP_002521482.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.11e-100NAC domain containing protein 44