PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29927.m000626

Common Name

LOC8270224, RCOM_1075820

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

YABBY

Protein Properties

Length: 185aa MW: 20966.8 Da PI: 8.2267

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29927.m000626	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	197.5	5.8e-61	7	159	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ + ++n + ++ s+s+ ++ + 29927.m000626 7 VVPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDF-------------QAPSHNSPDYRIELGSSSKCNNRIS 89 679******************************************99999988884.............2222222333333333333333344 PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++++ v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWah+P+ihfgl 29927.m000626 90 MRAPAPHNIAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHYPHIHFGL 159 455556666666679***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.5E-69	9	159	IPR006780	YABBY protein
SuperFamily	SSF47095	1.24E-7	104	152	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.3E-4	107	152	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MSSCVDVVPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDFQAPSHN SPDYRIELGS SSKCNNRISM RAPAPHNIAE ERVVNRPPEK RQRVPSAYNQ 120 FIKEEIQRIK ANNPEISHRE AFSTAAKNWA HYPHIHFGLT LNNHQTKLDD ASEKHLMSRA 180 ALYNK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29927.m000626

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002527201.1	1e-137	axial regulator YABBY 5
Swissprot	Q8GW46	3e-82	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	B9SMI2	1e-136	B9SMI2_RICCO; Axial regulator YABBY5, putative
STRING	XP_002527201.1	1e-137	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-84	YABBY family protein

Link Out ? help Back to Top
Phytozome	29927.m000626
Entrez Gene	8270224

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]