PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29929.m004534

Common Name

RCOM_1077400

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

FAR1

Protein Properties

Length: 256aa MW: 29281.2 Da PI: 7.8994

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29929.m004534	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.8	3.1e-22	72	163	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY +YA +GF +r++++++ +g+++++t+vCs+eg++++++++ ++ + r + r+gCka++ kk++ ++kw +++l +eH+H+l+ 29929.m004534 72 EFYGKYAMCMGFLTRINRTSQ--LDGSVISKTLVCSREGFQRPNNRNdmtYIRSPKARGSIRVGCKARVSFKKKQdSEKWFISNLIKEHTHPLN 163 6*************97655..5****************999665556777999***********999*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-19	72	163	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MLSCILNSFV AVDSERNPDI ATKRNNSIDS NPQISNDCGA NESNVDAVSE PESTLDEPYV 60 GQKFESEAAA HEFYGKYAMC MGFLTRINRT SQLDGSVISK TLVCSREGFQ RPNNRNDMTY 120 IRSPKARGSI RVGCKARVSF KKKQDSEKWF ISNLIKEHTH PLNDSVFQKA RISQVSGDDK 180 RIHELTQELM MERKRSASLR EFINLLFNHI EEHTQGLSEK IQYIAEKLNL YIVMLNEAMR 240 KISPVPYNFF PFLELA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29929.m004534

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015572119.1	1e-171	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	B9RM30	0.0	B9RM30_RICCO; Uncharacterized protein
STRING	XP_002514799.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	6e-44	FAR1 family protein

Link Out ? help Back to Top
Phytozome	29929.m004534