PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29929.m004544

Common Name

LOC8274251, RCOM_1077600

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

M-type_MADS

Protein Properties

Length: 237aa MW: 26715.2 Da PI: 8.003

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29929.m004544	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.3	3.1e-16	4	45	9	50
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++ + +R++++ KKAeELS+LCd+ va++ + ++gk+ +++ 29929.m004544 4 NKAVYKNRKATLKKKAEELSILCDVPVALVCYDPDGKVDTWP 45 566799***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	11.297	1	48	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.4E-14	5	44	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.49E-15	5	68	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-5	10	25	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-5	25	46	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MSLNKAVYKN RKATLKKKAE ELSILCDVPV ALVCYDPDGK VDTWPEDKSK VDEILTEFAR 60 KQNLKLPSSE TTAKNKNGNQ DLQVMENGNI LDEEKKKKRK NAVKKVYKTW DERFDYLPEE 120 DLIEILEVIE SKEKSLAQRV KAEEVGKKRK GTQVDDDDDG LVTLRLGRYD YSASSSSSGN 180 LTKDKGKCSI ESSSNGSDFR HGIAKGIGDL GVQLEESRKV TEAVPITMPQ KTIQFYF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	99	KKKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29929.m004544

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002514809.1	1e-173	agamous-like MADS-box protein AGL103
TrEMBL	B9RM40	1e-171	B9RM40_RICCO; Mads box protein, putative
STRING	XP_002514809.1	1e-172	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17113	4	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	2e-11	AGAMOUS-like 103

Link Out ? help Back to Top
Phytozome	29929.m004544
Entrez Gene	8274251