PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29929.m004659
Common NameLOC8286805, RCOM_1080560
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-YC
Protein Properties Length: 141aa    MW: 15893.2 Da    PI: 9.7112
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29929.m004659genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC569.1e-185931198
          NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98
                   e++ +  + e+P  r+kki+k d+d+++++++a  l+s++ elf+  l+ +s   a e+kr+t+k   i  av+r + + dfl+d  p 
  29929.m004659  5 ENTVETIRPEFPTGRVKKIMKLDKDINKVTSDALFLVSRSTELFLRLLAEKSAEVATEQKRKTIKLDHIRIAVKRHQpTSDFLLDSLPS 93
                   6667777889***************************************************************9976489*****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.0E-18892IPR009072Histone-fold
PfamPF008086.3E-211477IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.0E-201592IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MAEEENTVET IRPEFPTGRV KKIMKLDKDI NKVTSDALFL VSRSTELFLR LLAEKSAEVA  60
TEQKRKTIKL DHIRIAVKRH QPTSDFLLDS LPSPTESSDK LAAEKNRSRL IADKPAPPGT  120
RRIDEIFAKS ANEAPIQIND N
Cis-element ? help Back to Top
SourceLink
PlantRegMap29929.m004659
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514923.16e-97negative cofactor 2 complex subunit alpha
TrEMBLB9RMF41e-95B9RMF4_RICCO; DNA binding protein, putative
STRINGXP_002514923.12e-96(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.14e-51nuclear factor Y, subunit C13