PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29929.m004704
Common NameLOC8278427, RCOM_1081210
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 398aa    MW: 45781.1 Da    PI: 6.6368
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29929.m004704genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.53.2e-2788169286
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    W ++e++ Li +rrem+  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk +++e++     s +++y+++++
  29929.m004704  88 WVQDETRSLIGLRREMDGLFNTSKSNKHLWESISSKMREKGFDRSPTMCTDKWRNLLKEFKKARHQERGS---GSAKMSYYKEID 169
                    ********************************************************************84...556899***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-478149IPR009057Homeodomain-like
PROSITE profilePS500908.4980144IPR017877Myb-like domain
SMARTSM007170.001784146IPR001005SANT/Myb domain
CDDcd122035.42E-2886151No hitNo description
PfamPF138373.6E-2187171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MYLSEKTRPI DFYKEEVAPT ATRENMIIEV VSTNGELPPH QQHHHIHNPH NPQPQQQQQQ  60
QQQQMILGES SGEDTHEVKA PKKRAETWVQ DETRSLIGLR REMDGLFNTS KSNKHLWESI  120
SSKMREKGFD RSPTMCTDKW RNLLKEFKKA RHQERGSGSA KMSYYKEIDE ILRERSKNAQ  180
YKSPTPTSKV DSFMQFADKG FDDTSISFGP VEASGRPTLN LERRLDHDGH PLAITAADAV  240
AASGVPPWNW RETPGSGAEG QSFGGRVITV KYGDYTRRIG IDGTADAIRE AVKSAFRLRT  300
KRAFWLEDED QIIRSLDRDM PVGNYTLHLD EGLAIKVCLY DESDHIPVHT EEKVFYTEDD  360
YREFLVRRGW TCLREFDGYR NIDNMDDLRP GVIYRGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-4982167186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00141DAPTransfer from AT1G13450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29929.m004704
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514968.10.0trihelix transcription factor GT-1 isoform X3
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLB9RMJ90.0B9RMJ9_RICCO; Transcription factor, putative
STRINGXP_002514968.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]