PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29933.m001381
Common NameRCOM_1095230
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 180aa    MW: 20437.9 Da    PI: 6.9731
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29933.m001381genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-171073147
                     TSSS-HHHHHHHHHHHHHTTTT..................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..................tWktIartmgkgRtlkqcksrwqky 47
                     +g WT+eEd++l d+++ +G+g                   W++Ia++++ gRt++q+k++w+++
    29933.m001381 10 KGLWTEEEDKILMDYINVHGKGrwnhiakktgmadsnmmaLWSLIAKRVP-GRTDNQVKNYWNTH 73
                     678***********************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-12339IPR009057Homeodomain-like
PROSITE profilePS5129419.43578IPR017930Myb domain
SMARTSM007175.6E-14976IPR001005SANT/Myb domain
PfamPF002498.7E-91041IPR001005SANT/Myb domain
SuperFamilySSF466894.59E-141074IPR009057Homeodomain-like
CDDcd001673.67E-131374No hitNo description
Gene3DG3DSA:1.10.10.604.2E-125182IPR009057Homeodomain-like
PfamPF002491.0E-75173IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MESSDNKYKK GLWTEEEDKI LMDYINVHGK GRWNHIAKKT GMADSNMMAL WSLIAKRVPG  60
RTDNQVKNYW NTHISKKLAA GKQLSGRRFN VKDKTGKIAV SSSTNSMGLH SFSFSYVNNS  120
IATKEFTVDE DIQIASEVAD TQELTFFNSS YPYSFWFFDN EPELNIIGND FLGGYASDFA
Cis-element ? help Back to Top
SourceLink
PlantRegMap29933.m001381
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015578183.21e-117transcription factor WER, partial
TrEMBLB9SF721e-131B9SF72_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002524641.11e-131(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.12e-33myb domain protein 66