PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29938.m000611
Common NameLOC8264997, RCOM_1102060
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 166aa    MW: 17616.5 Da    PI: 7.2519
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29938.m000611genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.8e-161362154
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                   ++ykGVr++k +g+Wv+eIr+p   g +  r +lg++ tae Aa a++ a  +l+
  29938.m000611 13 KKYKGVRRRK-WGKWVSEIRVP---G-TqERLWLGSYSTAEAAAVAHDVASYCLR 62
                   59*****998.**********8...3.35*********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.27E-271371No hitNo description
PROSITE profilePS5103221.9971471IPR001471AP2/ERF domain
PfamPF008471.7E-91463IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-271471IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-191472IPR016177DNA-binding domain
SMARTSM003804.4E-301477IPR001471AP2/ERF domain
PRINTSPR003675.5E-91526IPR001471AP2/ERF domain
PRINTSPR003675.5E-93753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MSGTGPSPST EQKKYKGVRR RKWGKWVSEI RVPGTQERLW LGSYSTAEAA AVAHDVASYC  60
LRAGDGRLNF PLMLPASVKA DMSPKSIQKS ASDAGMAIDA QMILNRSMSS NGGNQCSRNG  120
SYAVNLGQEG ELGWEDGVGS NGSWSGGQGR DYGGDGDLSI SVEDYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-14171172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11521KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29938.m000611
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528041.11e-118ethylene-responsive transcription factor ERF020
SwissprotQ9C9I83e-43ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLB9SPX21e-117B9SPX2_RICCO; Transcriptional factor TINY, putative
STRINGXP_002528041.11e-118(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.13e-37ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]