PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29942.m000750
Common NameRCOM_1110800
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family FAR1
Protein Properties Length: 523aa    MW: 57614.8 Da    PI: 9.1511
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29942.m000750genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.12.8e-1863138290
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    fY+eYA+++GFs +  + ++s+ +g+i+ ++fvC +eg+ ++++ +             +C+akl+++++ ++kw vtk+ +eH+H+++
  29942.m000750  63 FYDEYARRLGFSSKPGNLSRSRADGTIVAQEFVCAREGFLKRRSAD-------------SCEAKLRIELRGQDKWTVTKFIKEHSHTMV 138
                    9*****************************************9988.............9**************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-1563138IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MDVHVIDEEE GMGHRVMAYD GDAETNEGGE LNNAENSSAH DDDGAAEPHV GMQFDTEDAA  60
KTFYDEYARR LGFSSKPGNL SRSRADGTIV AQEFVCAREG FLKRRSADSC EAKLRIELRG  120
QDKWTVTKFI KEHSHTMVSP SKVHYLRPRR HFAGAAKGIT EPFQGGGTVP SGVMYVSMDG  180
NRVSAEGNRG LRNASAADSN RVIKNATTFS FSVRPNTRKR ILGRDFFTVT NVLTLPAHYI  240
LRRWTRNSKN GPGIDERGGE VNGQESLILR YNNLCREAIK YAEEGATAVD TYNVALGALR  300
EGGKKVAAVK KNVAKVPPPS SQVGGIGYDD RKTSTSASDT TPLLWPRQDE VIRRFNLNDA  360
GAAAQSVADL NLPRMAPVSL QRDDGPPGNM AVLPCLKSMT WVMENKNLTP GNRVAVINLK  420
LQDYSKTPST ESEVKFQLSR VTLEPMLRSM AYISEQLSTP ANRVAVINLK LQDTETTSGE  480
SEVKFQVSRD TLGAMLRSMA YIREQLSNAA EPQPEPQTKK QRK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29942.m000750
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576309.10.0protein FAR1-RELATED SEQUENCE 3 isoform X2
SwissprotQ9ZVC91e-144FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLB9S6M50.0B9S6M5_RICCO; Uncharacterized protein
STRINGXP_002521644.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-137FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]