PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29950.m001173
Common NameLOC8260946, RCOM_1122450
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 365aa    MW: 40870.1 Da    PI: 8.0941
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29950.m001173genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.93.9e-5381411128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdeel+ +yLkkk++++++++ ++i++vdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk ++++ 
  29950.m001173   8 LPPGFRFHPTDEELILHYLKKKIASTPFPV-SIIADVDIYKSDPWDLPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKVIVASt 102
                    79****************************.89***************988899***************************************987 PP

            NAM  96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +e++g+kk Lvfykgr pkg kt+W+mheyrl
  29950.m001173 103 vaaggvVQENIGVKKALVFYKGRPPKGIKTNWIMHEYRL 141
                    8877665666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-635174IPR003441NAC domain
PROSITE profilePS5100560.5758174IPR003441NAC domain
PfamPF023657.9E-289141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MKNPQSNLPP GFRFHPTDEE LILHYLKKKI ASTPFPVSII ADVDIYKSDP WDLPAKAAFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKVIVA STVAAGGVVQ ENIGVKKALV  120
FYKGRPPKGI KTNWIMHEYR LADAPTCNHK PVRPKDSSTT MRLDDWVLCR IYKKTHASPP  180
SAVAAAAASD HDQEEEEEEE EQFVKENILP SLKTPIANKS LIPQKSSSFS NLLDAMDYSI  240
LSSFLSDNQF NPTGYDSIPA LNTTAISDQP LLNNFNPTTN SSGSSYLLQK LPHQLNNAPL  300
TPTMENKLKR PLSIIDEDLH QYPSKKLVSS CSFTNSTSQT DHMAHYQYNF LNQQLLLSPH  360
LQFQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-71517814169NO APICAL MERISTEM PROTEIN
1ut4_B3e-71517814169NO APICAL MERISTEM PROTEIN
1ut7_A3e-71517814169NO APICAL MERISTEM PROTEIN
1ut7_B3e-71517814169NO APICAL MERISTEM PROTEIN
3swm_A3e-71517817172NAC domain-containing protein 19
3swm_B3e-71517817172NAC domain-containing protein 19
3swm_C3e-71517817172NAC domain-containing protein 19
3swm_D3e-71517817172NAC domain-containing protein 19
3swp_A3e-71517817172NAC domain-containing protein 19
3swp_B3e-71517817172NAC domain-containing protein 19
3swp_C3e-71517817172NAC domain-containing protein 19
3swp_D3e-71517817172NAC domain-containing protein 19
4dul_A3e-71517814169NAC domain-containing protein 19
4dul_B3e-71517814169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29950.m001173
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525467.10.0NAC transcription factor 47
SwissprotQ84TD61e-121NAC47_ARATH; NAC transcription factor 47
TrEMBLB9SHJ80.0B9SHJ8_RICCO; Transcription factor, putative
STRINGXP_002525467.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-109NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]