PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29968.m000635
Common NameLOC8272284, RCOM_1148470
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HSF
Protein Properties Length: 409aa    MW: 46934.7 Da    PI: 4.4133
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29968.m000635genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.8e-35161082103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Flkk ye+++d++++++isws+++++f+++d+++f+ ++LpkyFkh+nf+SF+RQLn+YgF+k+++++         weF+++ F +gkk+ll++i
  29968.m000635  16 FLKKCYEMVDDDSTNSIISWSQDNDNFIIWDMTQFSIQLLPKYFKHNNFSSFIRQLNIYGFRKTDTDR---------WEFANDGFIRGKKHLLKNI 102
                    9***************************************************************9999.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                     r+k++
  29968.m000635 103 CRRKNS 108
                    ***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.8E-3611100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.8E-5312105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.03E-3312105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.4E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-181639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-185466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MVKSGEDGSL SSVAPFLKKC YEMVDDDSTN SIISWSQDND NFIIWDMTQF SIQLLPKYFK  60
HNNFSSFIRQ LNIYGFRKTD TDRWEFANDG FIRGKKHLLK NICRRKNSQG ADNRKSLQQQ  120
DNAVESCDKI GNEGLWKEIE NLKTSKNALM QELIKLRQHQ ENTDNKLVLL RDRFQGMEKN  180
QQQMLSFLVM VMQSPGFLAQ LLHPKENNWR MAEPGSIVEQ GADEEQWASG RMIVKYQPPI  240
DEMLTPMEVN YQPPIEEMPA SMVSENPQES NPFPDGIKDS FLSPDFMKLL MDENLSSFET  300
LAPFILPEFP DDGAWEQLLL ASSFSQNVEE SKRDADAENE IGIAASGNQV DQLDESENFG  360
FLVEDIEKYQ SLESKSMDYE NHSGKSQNLE IVTKKMALLT SEINQKNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-231110815123Heat shock factor protein 1
5d5u_B4e-231110524129Heat shock factor protein 1
5d5v_B4e-231110524129Heat shock factor protein 1
5d5v_D4e-231110524129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29968.m000635
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527523.10.0heat stress transcription factor A-8
TrEMBLB9SNF40.0B9SNF4_RICCO; Heat shock factor protein, putative
STRINGXP_002527523.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-103heat shock transcription factor A8