PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29969.m000262
Common NameRCOM_1151090
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 233aa    MW: 26451.6 Da    PI: 4.5317
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29969.m000262genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.62.8e-10129220182
                    EEEE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEE CS
             B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvF 82 
                    f+k+l+ +d  ++ +rl++++  ++ +          +++++++++t++d++g+++ + ++ + +++++vlt+GW+ F + ++L    Dfv++
  29969.m000262 129 FEKQLIANDIEENpSRLTMSNADVAGClvplldldkHEDPKKGIEVTVYDREGNEFIMVFK-TWSPRTCVLTRGWNTFLQKHKLLkHQDFVTI 220
                    6777777777777777777777776667777777664566799*****************5.556678**************98658999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-11129226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-10129225IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-7146220IPR003340B3 DNA binding domain
CDDcd100171.66E-9146221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGTGGDDDEL REIGEAALGL CSMKFEEIDQ KEASVLEKMK TENLGIGNEG INHNPISREQ  60
RRIPHSQQFA HQDKGNLENE QESSQNLPEN QEVTHSEEDI PNLVYNYKPP DIASFPGLNG  120
LIGECSKPFE KQLIANDIEE NPSRLTMSNA DVAGCLVPLL DLDKHEDPKK GIEVTVYDRE  180
GNEFIMVFKT WSPRTCVLTR GWNTFLQKHK LLKHQDFVTI WIFRKLDDGD FAL
Cis-element ? help Back to Top
SourceLink
PlantRegMap29969.m000262
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9SZC61e-173B9SZC6_RICCO; Uncharacterized protein
STRINGXP_002531345.11e-174(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.14e-18B3 family protein