PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29970.m001001
Common NameRCOM_1154580
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 238aa    MW: 26892.7 Da    PI: 10.7758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29970.m001001genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.7e-13121166555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h   ErrRR+ iN++f+eLr+llP+         +K++iL+++ eY+ sLq
  29970.m001001 121 HILSERRRREMINERFQELRKLLPSK-----VNKDKVSILTQTREYLASLQ 166
                    7788*********************8.....456999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.335116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-16118184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-16120183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.03E-11120170No hitNo description
PfamPF000101.4E-10121166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-11122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MCSSVSTSQL PKVQEGPSLR PVLCTTKPLQ PKPSTANSNQ QSKLLSSHTE NIHFTSQERE  60
VISERQSAFK CFAPSLTPTT SRKNGIQRQN MLNRAIAYYK NFQPRRTDVL AKSATRAQFH  120
HILSERRRRE MINERFQELR KLLPSKVNKD KVSILTQTRE YLASLQDLVA KLSQKNQQLE  180
SQLVPANEAA ENVCESSSTK LLPQTKEDSL NLNSNKGVIM RLIGNSNSKK VAVLSHHL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115128RAQFHHILSERRRR
2124129ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMap29970.m001001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021668467.14e-35putative transcription factor bHLH041 isoform X1
RefseqXP_021668469.14e-35putative transcription factor bHLH041 isoform X3
TrEMBLB9SG211e-172B9SG21_RICCO; Uncharacterized protein
STRINGXP_002524940.11e-173(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-15bHLH family protein