PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29973.m000390
Common NameRCOM_1156630
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TALE
Protein Properties Length: 599aa    MW: 65706.9 Da    PI: 7.0058
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29973.m000390genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-093964331954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  29973.m000390 396 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 433
                    554459******************************88 PP
2BELL104.76.5e-34264332472
           BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    e ++kk++L+s+l+eV++rYk+y++q+q+v+ sFe+vagl +a+pY+slAlk++S+hFr+Lk ai++q+
  29973.m000390 264 ESRRKKSRLISMLDEVYRRYKHYYQQMQAVVTSFECVAGLANAAPYASLALKTMSKHFRSLKIAITDQL 332
                    7899**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.3E-52200330IPR006563POX domain
PfamPF075266.5E-38205329IPR006563POX domain
PROSITE profilePS5007112.098374437IPR001356Homeobox domain
CDDcd000863.83E-13377438No hitNo description
SMARTSM003893.4E-10377441IPR001356Homeobox domain
SuperFamilySSF466894.71E-17379444IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27380441IPR009057Homeodomain-like
PfamPF059201.1E-18394433IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MAEGFEPYHV PQQSRRDKLR IVTQTHPQDL HSCASLLPLY DPSLLSSDLL ACAAYSNSLS  60
PCNKPNPVSL VKEEGPHLMV HDINASSDPF LYTPNNLQNL RDFDHPFNGS AAQALPFKPE  120
PLSTTTGQGL SLSLSSHHTH QTNLPLELNL QRYDSAVYDP DKVTATGGGG GYSVAGIIEG  180
SGNLTPNELS RSSVPLGPLT GYASILKGSR FLKPAQQLLE EFCDVGRGIY IEKITADASL  240
MDSPVDCLNA CGTADDPLNC GDGESRRKKS RLISMLDEVY RRYKHYYQQM QAVVTSFECV  300
AGLANAAPYA SLALKTMSKH FRSLKIAITD QLQFTNKGHG QLSHGKEEAI RLGNIDRGPY  360
VQRPGQSSGF VDHQPVWRPQ RGLPERAVTV LRAWLFEHFL HPYPTDTDKL MLAKQTGLSR  420
SQVSNWFINA RVRLWKPMVE EIHMLETRQA QKATQKEDQN ANRSSDHAPL SNSAVSDNPS  480
TSIQRVQDIP SKRTRNDLPD LPLGSEEPLN LSYNNMSNHP PIGVGLSPAN GSGGVSLTLG  540
LHQNNGIGLS EPFPMNAAQR FGLGLETNSQ GFVMGGFEVQ NRHFGRDVMG GQLLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A4e-16383441563Homeobox protein Meis2
4xrm_B4e-16383441563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29973.m000390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581269.10.0BEL1-like homeodomain protein 9
TrEMBLB9SV360.0B9SV36_RICCO; Bel1 homeotic protein, putative
STRINGXP_002529855.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-124TALE family protein