PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29974.m000235
Common NameLOC8271823, RCOM_1158820
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 333aa    MW: 37497 Da    PI: 8.2876
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29974.m000235genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.53.7e-5551311129
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                    lppGfrFhPtdeel+++yL++kv++ +++  ++i +vd++k+ePwdLp+k++ +ekewyfF  rd+ky+tg r+nrat++gyWk+tgkdke+++  
  29974.m000235   5 LPPGFRFHPTDEELITCYLTRKVSDVRFTS-KAIVDVDLNKCEPWDLPAKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFR-A 98 
                    79*************************999.88***************999999****************************************.9 PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                    g lvg+kktLvfykgrap+gek++Wvmheyrle
  29974.m000235  99 GILVGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 131
                    99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-633151IPR003441NAC domain
PROSITE profilePS5100559.3335151IPR003441NAC domain
PfamPF023654.8E-286130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEESLPPGFR FHPTDEELIT CYLTRKVSDV RFTSKAIVDV DLNKCEPWDL PAKASMGEKE  60
WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRAGI LVGMKKTLVF YKGRAPRGEK  120
SNWVMHEYRL ENKHLFKPTK EEWVVCRVFQ KSSSAAKKPQ QASSSQQSLG SPCDTNSVVN  180
EFGDIELPNL NSFVNSSSSG FNNMSAQSYN NENNVNMNMI NTNLNVNWAA TREAVVAAAT  240
LPSLSWPSSL LTSDLTMNSL ILKALQLRSY QQREAAAASN NDYSFLAQGI MPQFGSTDLS  300
SNFQASSSSS KGLESLPQQQ QQQEQPFNLD SIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-57415716171NO APICAL MERISTEM PROTEIN
1ut4_B1e-57415716171NO APICAL MERISTEM PROTEIN
1ut7_A1e-57415716171NO APICAL MERISTEM PROTEIN
1ut7_B1e-57415716171NO APICAL MERISTEM PROTEIN
4dul_A1e-57415716171NAC domain-containing protein 19
4dul_B1e-57415716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29974.m000235
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532152.10.0NAC domain-containing protein 92
SwissprotQ9FLJ24e-82NC100_ARATH; NAC domain-containing protein 100
TrEMBLB9T1N30.0B9T1N3_RICCO; Transcription factor, putative
STRINGXP_002532152.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-102NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]