PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29983.m003123

Common Name

LOC8269117, RCOM_1172120

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

HD-ZIP

Protein Properties

Length: 150aa MW: 17362.8 Da PI: 9.79

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29983.m003123	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.3e-18	20	72	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++ +eql++Le+ F+ n++++ae + eLA++lg++ rqV +W+qNrRa+++ 29983.m003123 20 KKRLAREQLQILESSFNANQKLKAEFKLELARQLGVPPRQVAIWYQNRRARHR 72 556889*********************************************98 PP
2	HD-ZIP_I/II	90.9	1.5e-29	20	110	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k+rl++eq+++LE+sF++++kL+ e K elar+Lg+ prqva+W+qnrRAR++ E++y+ +++++ ++++e+ +Lekev+ L+ el++ 29983.m003123 20 KKRLAREQLQILESSFNANQKLKAEFKLELARQLGVPPRQVAIWYQNRRARHRVETKEQEYNNIQQELRNVSAEKIKLEKEVDMLKYELNK 110 9*************************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.985	14	74	IPR001356	Homeobox domain
SMART	SM00389	4.9E-14	16	78	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.6E-17	16	83	IPR009057	Homeodomain-like
CDD	cd00086	1.27E-11	20	72	No hit	No description
Pfam	PF00046	8.2E-16	20	72	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.2E-18	22	81	IPR009057	Homeodomain-like
PRINTS	PR00031	6.2E-5	45	54	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	49	72	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.2E-5	54	70	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MNSHFHQSQT PSQHSSKPSK KRLAREQLQI LESSFNANQK LKAEFKLELA RQLGVPPRQV 60 AIWYQNRRAR HRVETKEQEY NNIQQELRNV SAEKIKLEKE VDMLKYELNK AHEMLILAST 120 PSATSLLSSS ASDDDICQLI LTCKPHLWLA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29983.m003123

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002517847.2	7e-93	LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-52
TrEMBL	B9RVS8	1e-106	B9RVS8_RICCO; Homeobox protein, putative
STRING	XP_002517847.1	1e-106	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16535	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	5e-22	homeobox protein 52

Link Out ? help Back to Top
Phytozome	29983.m003123
Entrez Gene	8269117