PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29983.m003135
Common NameRCOM_1172840
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 457aa    MW: 52332.1 Da    PI: 4.3036
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29983.m003135genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.91.5e-17151502128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykv.ePwdLpk.....kvkaeekewyfFskrdkkyat.gkrknratk..sgyWk.a 85 
                    ++G+rF Ptdeelv++yL+ k +g+  ++e+   +k +d y   ePw++ k     k+ + +++++fF++ +k +++ g++ nr +   +g+W+ +
  29983.m003135  15 AVGYRFCPTDEELVTYYLQGKNNGSLSSFENQllVKYCDFYGKeEPWEIWKrfggdKL-SVHEDLFFFTTLKKVAPEgGSKINRRVGssAGTWHcE 109
                    68********************9998665443348888*996549****862444322.23457799999999999746777885433499***55 PP

            NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    t  + +v++  ++l+  kk + + + ++   +   W m e++l
  29983.m003135 110 TSGNSSVIR-YQNLTAYKKRFNYRNPSR-LDQDRCWNMLEFSL 150
                    555666666.8999********985444.447888******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-186162IPR003441NAC domain
PROSITE profilePS5100519.34414181IPR003441NAC domain
PfamPF023652.6E-1416150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MQETQNSSSP WANMAVGYRF CPTDEELVTY YLQGKNNGSL SSFENQLLVK YCDFYGKEEP  60
WEIWKRFGGD KLSVHEDLFF FTTLKKVAPE GGSKINRRVG SSAGTWHCET SGNSSVIRYQ  120
NLTAYKKRFN YRNPSRLDQD RCWNMLEFSL DGGEHVLCQL KKSRKQSKKK KSQTVDDDFV  180
EVLEPEKRSR VEQELPNNFQ ENQEAVDIVP SMEERDSMAA MRIPLPHYSY QVSVNIGESQ  240
VKGSEPDIHL RVEQELPKSF LESLQENQKA AVDIVYSIEE QNAMTGMLAM PVPLPDDGSY  300
LDLINLGYYP NVAVEVFQPD EYLRVEEELP KNLNENQEDA AVMGEQESQK NFQENQEAAI  360
NTVPGMESQK NFQENQEAAV YMVPAVEEQE SNFQGTQEVA VDMIPIPREE HDTQAMAASM  420
PWPCHPEGSS ILSNYIDLDD HIDPTYDFDN LFGGYRY
Cis-element ? help Back to Top
SourceLink
PlantRegMap29983.m003135
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517861.21e-112NAC domain-containing protein 87
TrEMBLB9RVU00.0B9RVU0_RICCO; Uncharacterized protein
STRINGXP_002517859.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.17e-11NAC domain containing protein 28