PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29983.m003137
Common NameRCOM_1172960
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 215aa    MW: 24700.8 Da    PI: 9.996
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29983.m003137genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.56.7e-16151502128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykv.ePwdLpkkvka....eekewyfFskrdkkyat.gkrknr..atksgyWk.at 86 
                    p+GfrF Pt  elv++yL+ k +g+  ++e+   +k +d y   ePw++ kk+ +    + + ++fF++ ++ ++  g++ +r    ++g+W+ +t
  29983.m003137  15 PAGFRFYPTVAELVTCYLQGKNNGSLSSAEDRlpVKYCDFYGKdEPWEIWKKFGGdklrNGETLFFFTTLKNVAPDgGSKISRrvGSSAGTWHgET 110
                    89********************9999777554358889*996549****8644332222345679999999999873556666233559****655 PP

            NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +v++  + l+  +k + + +   +  +   W m ey+l
  29983.m003137 111 SGNSSVIR-CQGLTAYRKRFNYRN-PLRLDQDHCWNMLEYSL 150
                    55666666.8889********984.444457889******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-1710162IPR003441NAC domain
PROSITE profilePS5100517.27414181IPR003441NAC domain
PfamPF023654.6E-1415150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MRETQLSSSP GTNIPAGFRF YPTVAELVTC YLQGKNNGSL SSAEDRLPVK YCDFYGKDEP  60
WEIWKKFGGD KLRNGETLFF FTTLKNVAPD GGSKISRRVG SSAGTWHGET SGNSSVIRCQ  120
GLTAYRKRFN YRNPLRLDQD HCWNMLEYSL DGGEHVLCQL KRSRKQSRKR KSQTVNDDFM  180
EVLEREKHSR VGQQLLKGFQ RHHKAVDNLF GRYGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMap29983.m003137
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517861.21e-160NAC domain-containing protein 87
TrEMBLB9RVU21e-160B9RVU2_RICCO; Uncharacterized protein
STRINGXP_002517861.11e-161(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15170.14e-09NAC family protein