PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29983.m003179
Common NameRCOM_1174080
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 246aa    MW: 27802.6 Da    PI: 8.2344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29983.m003179genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.7e-0855105355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                    +  + +E++RR+++++ f++L +l P +   ++k  +   +   +A+++IksL+
  29983.m003179  55 TERKVIEKNRRNQMKTLFSNLNSLFPRR---NAKEaPPLPDQIDEAINHIKSLE 105
                    56789**********************7...555559999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-1151128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.28352104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-954123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.6E-4157232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MESQVSNGKM LHVVCINENR KKPEPSSHLG TLMKMNHPSS RMAMAPSGST SSTKTERKVI  60
EKNRRNQMKT LFSNLNSLFP RRNAKEAPPL PDQIDEAINH IKSLEEKLKK LKVKKESLSA  120
RKRPFSECSD SYESASASRA PQLQIKEMGS ALEIVLISGL DNQFMFYEII RILHQEGVDI  180
ASASYSVAGN SIVYIVHAEI RESNFSFGAA KVTDRLNRFV NELSSEIEVE PELWDFNDLQ  240
PDTWAF
Cis-element ? help Back to Top
SourceLink
PlantRegMap29983.m003179
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573948.21e-158transcription factor bHLH162
TrEMBLB9RVY40.0B9RVY4_RICCO; DNA binding protein, putative
STRINGXP_002517903.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-28bHLH family protein