PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29986.m001672
Common NameLOC8265474, RCOM_1180150
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ARR-B
Protein Properties Length: 473aa    MW: 54201.6 Da    PI: 6.3291
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29986.m001672genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.75.4e-23215271155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                    k+r+ Wt+eLHe+Fv+a ++L G+e+A+P +ile+   m+v+++t+eh++SHLQkYR+
  29986.m001672 215 KKRMIWTEELHEKFVRAFNHL-GHENAVPLKILEClqrMNVHSITREHIASHLQKYRM 271
                    78*******************.*********97643339******************8 PP
2Response_reg71.14.6e-24371441108
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl+vdD+++ + +l+++l++  y +v+ ++++++al +l+e +  +D++++D+ mp+mdG+ell+ i+e e+ lp++++++ ++ e +++ +  Ga
  29986.m001672  37 VLVVDDDRTCLLILEKMLRNCLY-KVTKCRKAKDALSMLREDKnkFDIVVIDLHMPDMDGFELLE-IAEFEMGLPVVMMSSDDDHEVIKKGVLHGA 130
                    89*********************.***************877778******************95.889999************************ PP

                    SEEEESS--HHHHH CS
   Response_reg  95 kdflsKpfdpeelv 108
                     d+l Kp+ +e+l 
  29986.m001672 131 CDYLIKPVRMEALK 144
                    ********999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.1E-11711469IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23006.8E-3934188No hitNo description
SuperFamilySSF521721.1E-3234158IPR011006CheY-like superfamily
SMARTSM004485.3E-2635147IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.30436151IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.4E-2137144IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.63E-2738151No hitNo description
SuperFamilySSF466892.69E-16214275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-22214275IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-19215271IPR006447Myb domain, plants
PfamPF002491.6E-5218270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016310Biological Processphosphorylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016301Molecular Functionkinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
METNNDNNKG KAIIQGSSSL EKTSDCVSNE FPAGLRVLVV DDDRTCLLIL EKMLRNCLYK  60
VTKCRKAKDA LSMLREDKNK FDIVVIDLHM PDMDGFELLE IAEFEMGLPV VMMSSDDDHE  120
VIKKGVLHGA CDYLIKPVRM EALKMIWQHV IRKKKNTAKD ELEQLIGLED DILLLTKPDS  180
DDDMIHGNLN NTRNSKRRRN NEYDDEPSDP AATGKKRMIW TEELHEKFVR AFNHLGHENA  240
VPLKILECLQ RMNVHSITRE HIASHLQKYR MYLRKQDDIP QLKQEHLLPS RMNKTSILEQ  300
PHPSDNLQFC TNTFPFPLPC HTTPQARLRA PLSTITNSDW TYDDQGKLLY PGMVESSYYP  360
MTKNSANNFP IISSTFGAAG PSCNTSSVAI QSVGKEYEWR NKENVAQNSK SLSALDSFHD  420
LYETKTDSTP QLIYEPSLYL QHFDQDEIFH GHLYQQGAAP LVIKYNNSTQ LDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-14212275262ARR10-B
5lxu_A9e-15215274157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29986.m001672
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002523141.10.0two-component response regulator ARR2
SwissprotQ9ZWJ92e-85ARR2_ARATH; Two-component response regulator ARR2
TrEMBLB9SAX20.0B9SAX2_RICCO; Two-component response regulator
STRINGXP_002523141.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1592633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-82response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]