PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29992.m001420
Common NameLOC8281204, RCOM_1188340
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-YB
Protein Properties Length: 233aa    MW: 25770.4 Da    PI: 5.8657
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29992.m001420genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.46.5e-5660155297
          NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                    +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrkting+d++wa++tlGfedyv+plk+y++kyre+egek
  29992.m001420  60 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGEDIIWAITTLGFEDYVAPLKLYISKYREIEGEK 155
                    89*******************************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.2E-5256177IPR009072Histone-fold
SuperFamilySSF471131.2E-3962166IPR009072Histone-fold
PfamPF008082.4E-2865129IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-1993111No hitNo description
PROSITE patternPS00685096112IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.2E-19112130No hitNo description
PRINTSPR006151.2E-19131149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEDESNGSGP YGPSLGSPES PCLKSTTSSS TATTTTNNNN KSSNSNNKNN NCSSSNNINK  60
EQDRFLPIAN VGRIMKKVIP GNGKISKDAK ETVQECVSEF ISFVTGEASD KCQREKRKTI  120
NGEDIIWAIT TLGFEDYVAP LKLYISKYRE IEGEKLNIPK QQRIEQRVQH QQQEQEQNLP  180
PYSSVYSSTA STAPMSQPSF VATDQAFSLA FSSSTSIQKQ LQQQDQIDSV GHW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A3e-4555150297NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29992.m001420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002516312.11e-172nuclear transcription factor Y subunit B-3
SwissprotQ9SIT93e-68NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLB9RRE31e-171B9RRE3_RICCO; Ccaat-binding transcription factor subunit A, putative
STRINGXP_002516312.11e-172(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132492430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.17e-64nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]