PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30000.m000371

Common Name

LOC8263177, RCOM_1203530

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Nin-like

Protein Properties

Length: 985aa MW: 107344 Da PI: 5.3475

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30000.m000371	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.6	1.2e-28	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yF++++k+AAk++gvc+T+LKriCRq+GI+RWP+Rki+++ 30000.m000371 598 AEKNVSLSVLQQYFAGSLKNAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 649 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.552	581	669	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-25	601	649	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.21E-23	880	968	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.5E-25	881	964	No hit	No description
SMART	SM00666	7.7E-25	885	967	IPR000270	PB1 domain
PROSITE profile	PS51745	22.036	885	967	IPR000270	PB1 domain
Pfam	PF00564	2.1E-18	886	966	IPR000270	PB1 domain
CDD	cd06407	6.82E-33	886	966	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 985 aa Download sequence Send to blast
MESPFSSKEK GINYWGSPRA QVDGMAQLTG GTRNLISEED VFNHFSELMN FDTYAGWCNS 60 PSAADQMSAF YGLLPFQSTA YASFDALNVS EPNSTFSVSG DASSTAGASY SCGDKFQQAN 120 FQVICHSDAM NTDDLGTKQI NGTQRQSNLS DIANRMISQP VGLSLDEKML RALSLLKESS 180 GGGILAQVWI PIQHGDQYIM TTFEQPYLLD QSLAGYREVS RTYTFSAEVK PGLPLGLPGR 240 VFISKVPEWT SNVAYYSNAE YLRVKHALHH RVQGSIALPV FQPPEMSCCA VLELVTVKEK 300 PDFDSEMESV CLALQTVNLR STAPPRLLPQ SLSRNQKAAL AEISDVLRAV CHAHRLPLAL 360 TWVPCNYAEG TVDEIIKVRV RDGNSRPAEK SVLCIWRQAC YVKDGKMEGF VHACSEHCIE 420 EGQGIAGKAL QSNHPFFFPD VKAYDITEYP LVHHARKYGL NAAVAIRLRS TYTGDDDYIL 480 EFFLPVNIKG SSEQQLLLNN LSGTMQKICI SLRTVSDADL GGRETFKVNF QKGAVPSFPP 540 MSASISSQTT LSEANLNSTD KIPLDASSSR NDGAESDGPH EQVMSASRRQ LEKKRSTAEK 600 NVSLSVLQQY FAGSLKNAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL 660 DSVQGVEGGL KFDPTTGGFV AAGSIIQEFD PKQSFPSSDK NCAARNSENA TVDAVSVPPA 720 PCTDGGNSTV KVEEDDCFID TCAGLLMKSS IPMNACSEDS KSVATDAEMF QEASLGSGPW 780 ACLENTPTFV KGGKWGLDKG SMKLDNSGTQ FVSRSSCSLA AGDELDTKIE GEDGIVEHNQ 840 PACSSMTDSS NGSGSMMHGS ISSSPSFEEG KYSKVKTSCD DSGSKITIKA TYKEDTIRFK 900 FEPSAGCFQL YEEVAKRFKL QNGTFQLKYL DDEEEWVMLV SDSDLQECIE ILDYVGTRSV 960 KFLVRDTPFT MGSSGSSNCF LGGSS

Sequence ? help Back to Top

Protein Sequence Length: 985 aa Download sequence Send to blast

MESPFSSKEK GINYWGSPRA QVDGMAQLTG GTRNLISEED VFNHFSELMN FDTYAGWCNS  60
PSAADQMSAF YGLLPFQSTA YASFDALNVS EPNSTFSVSG DASSTAGASY SCGDKFQQAN  120
FQVICHSDAM NTDDLGTKQI NGTQRQSNLS DIANRMISQP VGLSLDEKML RALSLLKESS  180
GGGILAQVWI PIQHGDQYIM TTFEQPYLLD QSLAGYREVS RTYTFSAEVK PGLPLGLPGR  240
VFISKVPEWT SNVAYYSNAE YLRVKHALHH RVQGSIALPV FQPPEMSCCA VLELVTVKEK  300
PDFDSEMESV CLALQTVNLR STAPPRLLPQ SLSRNQKAAL AEISDVLRAV CHAHRLPLAL  360
TWVPCNYAEG TVDEIIKVRV RDGNSRPAEK SVLCIWRQAC YVKDGKMEGF VHACSEHCIE  420
EGQGIAGKAL QSNHPFFFPD VKAYDITEYP LVHHARKYGL NAAVAIRLRS TYTGDDDYIL  480
EFFLPVNIKG SSEQQLLLNN LSGTMQKICI SLRTVSDADL GGRETFKVNF QKGAVPSFPP  540
MSASISSQTT LSEANLNSTD KIPLDASSSR NDGAESDGPH EQVMSASRRQ LEKKRSTAEK  600
NVSLSVLQQY FAGSLKNAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL  660
DSVQGVEGGL KFDPTTGGFV AAGSIIQEFD PKQSFPSSDK NCAARNSENA TVDAVSVPPA  720
PCTDGGNSTV KVEEDDCFID TCAGLLMKSS IPMNACSEDS KSVATDAEMF QEASLGSGPW  780
ACLENTPTFV KGGKWGLDKG SMKLDNSGTQ FVSRSSCSLA AGDELDTKIE GEDGIVEHNQ  840
PACSSMTDSS NGSGSMMHGS ISSSPSFEEG KYSKVKTSCD DSGSKITIKA TYKEDTIRFK  900
FEPSAGCFQL YEEVAKRFKL QNGTFQLKYL DDEEEWVMLV SDSDLQECIE ILDYVGTRSV  960
KFLVRDTPFT MGSSGSSNCF LGGSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30000.m000371

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002530298.1	0.0	protein NLP9
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	B9SWC9	0.0	B9SWC9_RICCO; Transcription factor, putative
STRING	XP_002530298.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	30000.m000371
Entrez Gene	8263177

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]