PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30005.m001245
Common NameRCOM_1211440
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 179aa    MW: 19228.4 Da    PI: 4.0987
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30005.m001245genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like37.17e-12153176124
        G2-like   1 kprlrWtpeLHerFveaveqLGGs 24 
                    kprlrWtpeLH++Fv+av+qLGGs
  30005.m001245 153 KPRLRWTPELHACFVRAVRQLGGS 176
                    79*********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-10150175IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEEFQGGGGG GVGNVPVSSQ QIIDGPDIRN GGGNGGGNGG NLIGNSNELE LQLEFDPELD  60
LATLLKRWKN IDDAFLELQE ILEAPVPNNI VQDHVASSED GKLVAVMKEL NATPNNMVHD  120
HVVLSEGYGV LSEEEEDLGY FPPPSAVFTT DPKPRLRWTP ELHACFVRAV RQLGGSISQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap30005.m001245
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524562.21e-125uncharacterized protein LOC8288298
TrEMBLB9SEZ31e-126B9SEZ3_RICCO; Uncharacterized protein
STRINGXP_002524562.11e-127(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1880056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.21e-09G2-like family protein