PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30005.m001256
Common NameRCOM_1211540
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HB-other
Protein Properties Length: 1120aa    MW: 127207 Da    PI: 7.7541
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30005.m001256genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.13e-13755856
                   -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   ++ ql++Le+++++++yps+  +eeLA  l+Lt +qV+ WF  rR ++k
  30005.m001256  7 SPLQLQALEKFYAEQKYPSQMVMEELAGVLDLTFKQVQGWFIERRRRDK 55
                   788********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.669157IPR001356Homeobox domain
SMARTSM003895.5E-13161IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-12557IPR009057Homeodomain-like
CDDcd000866.76E-13557No hitNo description
SuperFamilySSF466893.38E-13558IPR009057Homeodomain-like
PfamPF000468.6E-11755IPR001356Homeobox domain
PfamPF156122.4E-6602642IPR028942WHIM1 domain
PfamPF156136.8E-12736809IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1120 aa     Download sequence    Send to blast
MEMKRKSPLQ LQALEKFYAE QKYPSQMVME ELAGVLDLTF KQVQGWFIER RRRDKSKDIP  60
PSLNKEHSVI KGRNCLGVAA ATRMISKTKR KKKKLIPSQD LLTPDYVLCK IFRKDGPPLG  120
VEFDSLPSKA FLNSIDSRNS NLASQENQRA NRKRKVSKQD TSTCQDYNNS DPAMKHGIGK  180
GLMTVWRATN PTAGHFPPRI PFSQKEIVPQ VPTPTPRKSL CRKKKQQLVS IMKQKRLENK  240
THHKRKPSVK QRVVESQRDE FQKLPLKERC ELALEGVISQ ERINQFAMLA DDEELELREL  300
QAGPNPLSCS DNCAINKLYG CSLCKDLLPK FPPNCVKMKQ PFAKQPWDSS ADTVKKLFKD  360
SLLLGKIHVA LLKLLLSDVE TEISSRYLPH SSVSCKFLAL LHSVEDQEFL MEFWKKSLNP  420
LTWIEILHQI LVAAGFGSRQ GAFRKESLSK EMNLMMKYGL RVGTLKGELF TLLSERGNNG  480
LKIPELAKSL QIAELNLTNT TEELELLISS TLSSDITLFE KISPSAYRLR ISTLSKEADD  540
FQSDTEDSGS VHDDFNDSGT CSSSDSECEL ENPNSRKSKR SNSHKNKSHM LTVYNEIDES  600
HPGEVWLLGL VEGEYADLCI EEKLNALVAL IDLLSAGSSI RMEDSTRPTT ESVPNTLHYG  660
SGAKIKRSSS KQHNLPRPSW IHVGQINNAT ELHTSSTSRP IDSSVSILKF NEREKSSSKG  720
NDTQETELGV NLHPMQSIFL GSDRRYNRYW LFLGPCNSHD PGHKRVYFES SEDGHWEVID  780
TAEALRALLS VLDDRGTREA LLIESLEKRE GFLCLEMSSS IANDSENRHL TLPDHSELEI  840
VREDSTSPVS DVDNNLSLNE VTNDSSPLCG AIILAAGKKE EDENQKWCRL QEFDAWIWNY  900
FYCDLNSVKR SKRSYFESLA RCETCHDLYW RDEKHCRFCH TTFELDFDLE ERYAIHSATC  960
RHKGDHEMLR KHKVLSSQLQ ALKAAVHAIE SAMPEDALRG AWTKSAHRLW VKRLRRTSSV  1020
AELLQVVADF VAAINENWLC QNSAQDSNNY LEEIIACFPT MPQTSSALAL WLVKLDDLIC  1080
PYLERVQCEN NQGTRTKCTG ILLLSIASYS ILRSNVFKLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853ERRRRD
24954RRRRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30005.m001256
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN8518651e-39LN851865.1 Lupinus angustifolius BAC clone 137O24, cultivar Sonet.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015578100.10.0homeobox-DDT domain protein RLT3 isoform X2
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLB9SF030.0B9SF03_RICCO; Uncharacterized protein
STRINGXP_002524572.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61181519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator