PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30006.m000287
Common NameLOC8287672, RCOM_1216270
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HSF
Protein Properties Length: 248aa    MW: 28738.2 Da    PI: 7.4672
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30006.m000287genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.99.2e-35231142102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl k+y ++ed+e++++isw+++g+ fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF ++ F+kg++ell++i
  30006.m000287  23 FLLKTYMLVEDPETDHVISWNADGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNDMFRKGERELLCQI 109
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  30006.m000287 110 HRRKA 114
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.04E-3319112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-5419112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.0E-3719112IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.1E-3123112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-182346IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEMEANDHRG LLEYVRKTTP PPFLLKTYML VEDPETDHVI SWNADGTGFV VWQPAEFARD  60
LLPTLFKHSN FSSFVRQLNT YGFRKVATSR WEFCNDMFRK GERELLCQIH RRKAWSSKQQ  120
QQPPQPNNIA ATQGGTTQES DEDQRSSSTS SSSEFNTLID ENKRLKKENG ALCYELTSMK  180
RKCKELLDLV AKYAHLEREG HNNNSNNDDD ERPKLFGVRL EVEGENEKKR KRAEIRECAS  240
ILLSQSCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-202111218120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30006.m000287
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529512.10.0heat stress transcription factor B-3
SwissprotO222302e-71HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLB9SU430.0B9SU43_RICCO; Heat shock factor protein, putative
STRINGXP_002529512.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.13e-64heat shock transcription factor B3