PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30026.m001484
Common NameLOC8275192, RCOM_1252030
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HSF
Protein Properties Length: 402aa    MW: 46226.4 Da    PI: 4.9151
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30026.m001484genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.11.9e-35141052102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+ye+++d+++++++sws++++sf+v+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ +l+++i
  30026.m001484  14 FLSKTYEMVDDPSTNSVVSWSQSNKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEDFIRGQPHLMKNI 100
                    9***************************************************************9998.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  30026.m001484 101 HRRKP 105
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.89E-369103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.8E-3910103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.3E-6410103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDESQGSSNS LPPFLSKTYE MVDDPSTNSV VSWSQSNKSF IVWNPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFANEDFI RGQPHLMKNI HRRKPVHSHS LQNLQGQGSN  120
PLTESERQSL KDDIERLKHE KEALVLELKR QERQRQGFEM QMQTLKEKLQ QMERRQQTMV  180
SFVARVLQKP GLALNLMSQM EPGHDRKRRL PRIGYFYDEA SIEDCQTIAR ENADSNSVAL  240
SNVEQFEQLE SSLTLWESIR DDVQTNIQRD STMELDESTS CAESPAISCV PLNIDIRPKS  300
PTIDMNSEPA AASAPEPDPP KEQAAGTAPP TVATGVNDVF WEQFLTENPG STDTQEVQSE  360
RKDSNDRKNE IKPSDQEKFW WNMRNVNNLA EQMGHLTPAE RT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24410320129Heat shock factor protein 1
5d5v_B2e-24410320129Heat shock factor protein 1
5d5v_D2e-24410320129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30026.m001484
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522270.10.0heat stress transcription factor A-4a
RefseqXP_015576700.10.0heat stress transcription factor A-4a
RefseqXP_015576701.10.0heat stress transcription factor A-4a
SwissprotO494031e-148HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLB9S8F10.0B9S8F1_RICCO; Heat shock factor protein, putative
STRINGXP_002522270.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-145heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]