PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30032.m000457
Common NameLOC8268610, RCOM_1258620
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TCP
Protein Properties Length: 442aa    MW: 48130.3 Da    PI: 6.8783
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30032.m000457genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP32.43.1e-102085570
            TCP  5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70
                   ++++  ++T++   d+RvR++  c   +  L +eLG+ +d +ti WL+ q  p+ ++ +   ++++
  30032.m000457 20 RQPQRRRSTAGHRPDKRVRIPPICVPAMIHLKQELGLRSDAETIHWLIHQVRPQLIDPPAKATKPP 85
                   6778899***********************************************999888866665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.0E-62879IPR005333Transcription factor, TCP
Gene3DG3DSA:3.60.110.104.8E-58130406IPR003010Carbon-nitrogen hydrolase
SuperFamilySSF563172.35E-55132414IPR003010Carbon-nitrogen hydrolase
PROSITE profilePS5026333.649133418IPR003010Carbon-nitrogen hydrolase
PfamPF007953.3E-48134402IPR003010Carbon-nitrogen hydrolase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0000257Molecular Functionnitrilase activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MELVEVQVQP SSSNINEPDR QPQRRRSTAG HRPDKRVRIP PICVPAMIHL KQELGLRSDA  60
ETIHWLIHQV RPQLIDPPAK ATKPPISHRN RPSCTVLDDF ALKTDCMEYL NCDKPISYPP  120
LAVTGALIAS QRVRATVVQA STVFFDTPAT MDKAERLIAG AAAYGSKLVV FPEAFVGGHP  180
RCMKLDAGTT DDDLHKYYAS AINVPGAEFG RLAKIAGKYK VHLVIGVVER AGPYLLSTIL  240
FFNSVGQYLG EHRKLMLMPS ETAMWYSGEK SSPPVYETSI GKVGGLVGWD NKLPLLRTEL  300
YAKGIDIYCA PSSDGKEIWK ASMIHIALEG GCFILSANQF CRRRDCPVPP GDSDSDISLD  360
AITCPGGSVI VSPSGTILAG PNYQDECLIS ADLDLVEITR AKTGFSTVGS NLKPNNVDWT  420
ANEPTPVLLT SVLEAVPHEL SC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3wuy_A1e-3313043813343Nitrilase
3wuy_B1e-3313043813343Nitrilase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHighly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30032.m000457
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530518.10.0bifunctional nitrilase/nitrile hydratase NIT4B
SwissprotQ6H8491e-121NRL4_ORYSJ; Bifunctional nitrilase/nitrile hydratase NIT4
TrEMBLB9SWZ90.0B9SWZ9_RICCO; Nitrilase, putative
STRINGXP_002530518.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF458388
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.17e-10TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]