PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30032.m000479

Common Name

LOC8269734, RCOM_1259530

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

NAC

Protein Properties

Length: 261aa MW: 29934.3 Da PI: 6.5166

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30032.m000479	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	130.7	1.1e-40	4	138	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 l+pG+rF Pt+eelv++yL++k+eg++++l++ vi+ +diy++ Pw+Lp+ +++ ++w+ F++r++++ +g r++r t+ gyWkatg+ 30032.m000479 4 LAPGVRFYPTEEELVSFYLHHKLEGNRNDLNQvldlVIPVLDIYEFSPWELPQysgiYNRTDPEQWFLFIPRQESEVRGGRSKRLTTVGYWKATGS 99 579**********************55544444469999*******646543334566****************9999**** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s++++ + +k+t+vfykgrapkg+ktdW m+ey+ 30032.m000479 100 PGYVYSSDNRCIAVKRTMVFYKGRAPKGHKTDWKMNEYK 138 ************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-43	3	168	IPR003441	NAC domain
PROSITE profile	PS51005	45.091	4	168	IPR003441	NAC domain
Pfam	PF02365	6.6E-20	6	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MEDLAPGVRF YPTEEELVSF YLHHKLEGNR NDLNQVLDLV IPVLDIYEFS PWELPQYSGI 60 YNRTDPEQWF LFIPRQESEV RGGRSKRLTT VGYWKATGSP GYVYSSDNRC IAVKRTMVFY 120 KGRAPKGHKT DWKMNEYKAI QRETSSSTAA NANPKLREEF SLCRVYKKSK CLRSFDRRPV 180 GVEVGPRIRA QQAHGHGATE AHQNPAVMET RSSHDDNISS SGDHGYPQKT GEESNTALAI 240 GNESFLDWDQ LENWYFDGDD I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-30	4	168	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-30	4	168	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-30	4	168	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-30	4	168	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-30	4	168	20	168	NAC domain-containing protein 19
3swm_B	2e-30	4	168	20	168	NAC domain-containing protein 19
3swm_C	2e-30	4	168	20	168	NAC domain-containing protein 19
3swm_D	2e-30	4	168	20	168	NAC domain-containing protein 19
3swp_A	2e-30	4	168	20	168	NAC domain-containing protein 19
3swp_B	2e-30	4	168	20	168	NAC domain-containing protein 19
3swp_C	2e-30	4	168	20	168	NAC domain-containing protein 19
3swp_D	2e-30	4	168	20	168	NAC domain-containing protein 19
4dul_A	2e-30	4	168	17	165	NAC domain-containing protein 19
4dul_B	2e-30	4	168	17	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30032.m000479

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002530539.1	0.0	NAC domain-containing protein 90
TrEMBL	B9SX20	0.0	B9SX20_RICCO; NAC domain-containing protein, putative
STRING	XP_002530539.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	5e-71	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	30032.m000479
Entrez Gene	8269734