PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30054.m000786
Common NameRCOM_1277790
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ARR-B
Protein Properties Length: 478aa    MW: 53628.8 Da    PI: 7.9746
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30054.m000786genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.61.2e-27234288156
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                    k +++WtpeLH++Fv+aveqL G ++A+P++ile+mkv+gLt+++v+SHLQk+R++
  30054.m000786 234 KMKVDWTPELHKKFVQAVEQL-GVDQAIPSRILEMMKVEGLTRHNVASHLQKFRMH 288
                    5689*****************.********************************96 PP
2Response_reg27.61.5e-10201261109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl+ +++ + +e +++ le  +y +v  + +  eal  + +k   +++ ++ ++ ++++G   +k +++++ +lp i+ +     +++ +++ +Ga
  30054.m000786  20 VLLLEEDSISAEEIKSKLEAMDY-IVSLFCNENEALSAISDKPesFHVAIVEVSTSNSNGN--FKFLETAK-DLPTIMTSNIHCLSTMMKCIALGA 111
                    799999*****************.***************777777***************5..66676666.899999998888************ PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     +fl Kp ++e+l++
  30054.m000786 112 VEFLRKPLSEEKLRN 126
                    ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.56E-1416134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.9E-1516166No hitNo description
PROSITE profilePS5011019.719132IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.3E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.94E-821131No hitNo description
PROSITE profilePS5129414.703231290IPR017930Myb domain
SuperFamilySSF466892.42E-18232291IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-26232290IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-25234289IPR006447Myb domain, plants
PfamPF002492.8E-8237285IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MVCTANELSA WKDFPKGLRV LLLEEDSISA EEIKSKLEAM DYIVSLFCNE NEALSAISDK  60
PESFHVAIVE VSTSNSNGNF KFLETAKDLP TIMTSNIHCL STMMKCIALG AVEFLRKPLS  120
EEKLRNIWQH VVHKAFNAGG NVVSDSLKPV NDSGASIPQL KVETEERKNK NLERTENVSP  180
AHENEYEQSP LSDKYPAPST PQLKQGASSD GSAENPNKAS RHHKSYGTKV NRKKMKVDWT  240
PELHKKFVQA VEQLGVDQAI PSRILEMMKV EGLTRHNVAS HLQKFRMHKR HILPKENDRR  300
WSQQRDQIQR NYYAHKPVMA YPPYHTNHTF PMSPVYPMWG ATGSHPAGVP MWASPGYPPW  360
VPTESWHWKP YPGMHAHADA WGCPVAPPPH NPYSSSPQNT AGFRNAGTVD NSCSVPQNSF  420
DQYPSEEVID KVVKEAINKP WLPLPLGLKP PSTDLVLAEL SRQGISRVPP HINDSHSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-15232287358ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30054.m000786
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014645.10.0LOW QUALITY PROTEIN: two-component response regulator-like APRR2
SwissprotQ6LA431e-128APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLB9SNR60.0B9SNR6_RICCO; Transcription factor, putative
STRINGXP_002527635.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-132ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]