PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30054.m000801
Common NameRCOM_1278130
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 886aa    MW: 98237.5 Da    PI: 8.6069
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30054.m000801genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.7e-06165184525
                    --SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                    +C++fa+ G C++G+ C+F H
  30054.m000801 165 ICKDFAA-GRCRRGNHCQFLH 184
                    7******.************* PP
2zf-CCCH24.54.7e-08222243325
                    S---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                    t  C++f++ G C++G++C+FaH
  30054.m000801 222 TDSCSDFLK-GNCRRGASCRFAH 243
                    567******.************* PP
3zf-CCCH20.21e-06287307425
                    ---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                    ++C+ffa+ G C+ G  C+F+H
  30054.m000801 287 VPCKFFAA-GNCRNGKYCRFSH 307
                    69**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.929160187IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-5162185IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4162186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-6164184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.713219246IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-4219245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5222244IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5222243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601283310IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013283309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5287308IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MSGSGRRRSS KWDLKEESRI LFDSTHEKGW SGKAGLSFHD KESQRGWLSP ETAGGNRPKW  60
SVLEPLSGRR GSRRDDSIDE DHNRSLKAMT AWEGEENYGT RMSPGLDEWR HQSRRNSPRN  120
EWKRSRRSRS RSQSRSRSRS PDRGFGREPG LYDRSRSRSA VSSQICKDFA AGRCRRGNHC  180
QFLHQGTQTY EDDWERHRKT ATSQYPIPHD SREYPTGSGR STDSCSDFLK GNCRRGASCR  240
FAHHGATHAA GKGSSNEVTR ERNSDRRHRD ASPERHGDRE IRRPADVPCK FFAAGNCRNG  300
KYCRFSHQGQ ALLSPERSRD GRFSHDQNAD DIEKVWNGPK WSSTSTTDAV KLNEDKNGTV  360
GELDHRATAR SVDDRWGHCL EEDKTLRESL IDHKMPESDK KETLLWKTEN AGDKILGSEQ  420
RAGENWLGDM DMSPEWNYKV QPSNHIDKQE CVSLTSCDPI ITQEASGQVH NATAVMPSII  480
NEASTKPPEY SSRDVSTSAL PHDDKNLTGK AASSHGGIFS NMVSAPSFNQ NSLNSSAVPL  540
PGINMGGQGQ VTILTSGGRG FINPQSQTLF QEGNTLNRPD VGEANVSQVN PGVPITQNMV  600
SSEQLTQLTS ISASLAQLLA NGQQLPQLYA AHTSHAHNST ETPSFANSEG PVKANSAVTI  660
QLNETVGKQK QCDPLSDGIE PEKHDLNVND PSGLSPDVIG QKNFINGKLE MSSKSVPPSS  720
LAGAPKTGDY NKFCSLEEPN NKGYHLNQLE PGAVSKETKE NNRVVTEESG KVEDKAVQEN  780
DLLENVDGDG KIDEGKKGKD VKGIRAFKFA LVEFVKDLLK PAWKEGQMSK DAYKNIVKKV  840
VDKVTGTMQG ASIPQTQEKI QQYLSFSKPK LTKLVQAYVE KLQKDK
Cis-element ? help Back to Top
SourceLink
PlantRegMap30054.m000801
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527649.20.0zinc finger CCCH domain-containing protein 38
RefseqXP_015579941.10.0zinc finger CCCH domain-containing protein 38
RefseqXP_015579942.10.0zinc finger CCCH domain-containing protein 38
TrEMBLB9SNT00.0B9SNT0_RICCO; Uncharacterized protein
STRINGXP_002527649.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-16C3H family protein