PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30054.m000804
Common NameLOC8289070, RCOM_1278150
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 349aa    MW: 37996 Da    PI: 7.269
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30054.m000804genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-0887111126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt+lC+ f++ GtC+y  +C+FaH+
  30054.m000804  87 FKTKLCCKFRA-GTCPYITNCNFAHS 111
                    69*********.*************8 PP
2zf-CCCH18.63.3e-06159184126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    yk + C+ f+    C+yGd+C+F H+
  30054.m000804 159 YKGRHCKKFYTEEGCPYGDNCTFLHD 184
                    78888********************7 PP
3zf-CCCH41.81.8e-13229254126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt++C+ +  tG+C++G++C+FaHg
  30054.m000804 229 WKTRICNKWELTGYCPFGNKCHFAHG 254
                    8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.0E-1484119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-784117IPR000571Zinc finger, CCCH-type
SMARTSM003560.003586112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8486113IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-587111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-9157186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-7157186IPR000571Zinc finger, CCCH-type
SMARTSM003560.058158185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23158186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-17224258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-10225259IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-9228255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225228256IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-11229254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDYSRDNVVH VIPGTGPDNW LPNSADSGVV WATEDDYQMW NNSDGPNDNT PSNSSFQSRS  60
GSEPPNKKSK NNSQELSSKK SIGKMFFKTK LCCKFRAGTC PYITNCNFAH SIEELRRPPP  120
NWQEIVAAHE EERGNVMEVR EEFQIPSIGG FSGESQRSYK GRHCKKFYTE EGCPYGDNCT  180
FLHDEQSKNR ESVAISLGPG GYGGGGGGGA GSGNGSGGGS AGNVKPSNWK TRICNKWELT  240
GYCPFGNKCH FAHGAAELHR YGGGLMESEG KDPSSVPADT KQGGVLSKTP ADIVVASVAS  300
VPHSDVYHLG VPSQRPSILM QRPGQRSHQK WKGPDKISRI YGDWIDDIE
Cis-element ? help Back to Top
SourceLink
PlantRegMap30054.m000804
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527651.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-132C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLB9SNT20.0B9SNT2_RICCO; Nucleic acid binding protein, putative
STRINGXP_002527651.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-133C3H family protein