PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30055.m001542
Common NameLOC8271900, RCOM_1280320
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 343aa    MW: 39276.5 Da    PI: 7.6085
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30055.m001542genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05180199120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++C++C+k+F+r  n++ H+
  30055.m001542 180 FECSICSKTFNRYNNMQMHM 199
                    89*****************9 PP
2zf-C2H216.13.3e-05264286123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk+F  k + ++H +++
  30055.m001542 264 FMCRKCGKTFAVKGDWRTHEKNC 286
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.18E-5171203No hitNo description
PROSITE profilePS5015710.658180207IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-5180199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.096180202IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-5180199IPR007087Zinc finger, C2H2
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
SMARTSM00355190227259IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.68E-6250284No hitNo description
Gene3DG3DSA:3.30.160.608.2E-6260284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704264284IPR007087Zinc finger, C2H2
SMARTSM0035535264284IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGLWNYHVQD NTNLCFQPPT FIEWLKPSSS SVTSSSSSSS CSSATQQVQL TNPSMTILKL  60
PLLYPQQLEN QDQFVKETIQ CLPLFTEKEE LKEEENMEVQ ESVVKEEKID QVTVALHIGL  120
PNTSSGDSDL DQVETKVSQE KQEQEQPFMI KKSFHGCTFN AESRFWIPTP AQILVGPMQF  180
ECSICSKTFN RYNNMQMHMW GHGSEFRRGP DSLRGTQPAA MLRLPCYCCA QGCKNNINHP  240
RAKPLKDFRT LQTHYKRKHG AKPFMCRKCG KTFAVKGDWR THEKNCGKLW YCTCGSDFKH  300
KRSLKDHIRS FGKGHSPHPS LEGFEDDQKE CITTGSEEDD FVR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30055.m001542
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002523788.10.0zinc finger protein WIP3
SwissprotQ9SGD11e-126ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLB9SCR90.0B9SCR9_RICCO; TRANSPARENT TESTA 1 protein, putative
STRINGXP_002523788.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-123WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]