PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30055.m001567

Common Name

LOC8271925, RCOM_1281670

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

NF-YB

Protein Properties

Length: 157aa MW: 17872.6 Da PI: 9.4571

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30055.m001567	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	41	4.6e-13	31	118	11	93
NF-YB 11 anvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 a v r++k l + + i kd+ + e + fi ++++ a+d c++ +r+t+n+dd++ al ++ f +++ plk+ l+++++ 30055.m001567 31 AIVRRLVKDKLSQcspdvEFIIPKDSVAVFSETARIFIHYLSATANDICKEANRQTMNADDVFKALEEIEFSEFIRPLKASLNEFKQK 118 667777776665411111345899***********************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.4E-26	20	141	IPR009072	Histone-fold
Pfam	PF00808	6.6E-8	27	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	3.81E-21	30	135	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MSETEKDEKI VIEEKEKVEK VVPQVEELQK AIVRRLVKDK LSQCSPDVEF IIPKDSVAVF 60 SETARIFIHY LSATANDICK EANRQTMNAD DVFKALEEIE FSEFIRPLKA SLNEFKQKTA 120 GRKAGVSEPK EVEKKRKVEE DSLSKKSRGK SKGKKGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	136	PKEVEKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30055.m001567

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002523813.1	1e-107	DNA polymerase epsilon subunit 3
TrEMBL	B9SCU4	1e-106	B9SCU4_RICCO; DNA polymerase epsilon P17 subunit, putative
STRING	XP_002523813.1	1e-107	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11863	32	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	4e-39	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	30055.m001567
Entrez Gene	8271925