PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30055.m001612
Common NameRCOM_1282430
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 387aa    MW: 43431.1 Da    PI: 6.8605
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30055.m001612genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.71e-48171441128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    + pGfrF+Ptd el+++yLkkk+eg +  + evi+ev+i+++ePwdLp + +v ++e+ew+fFs r +ky++g++++rat+ gyWkatgk+++v+s
  30055.m001612  17 MFPGFRFSPTDVELISYYLKKKMEGAEKCV-EVISEVEICSHEPWDLPaAkAVIQSENEWFFFSARGRKYPNGTQSRRATELGYWKATGKERNVKS 111
                    579************************777.99**************95335556788************************************** PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ ++g+k+tLvf+ grapkge+t+W+mhey +
  30055.m001612 112 -GSDVIGTKRTLVFHIGRAPKGERTEWIMHEYCM 144
                    .999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-537159IPR003441NAC domain
PROSITE profilePS5100551.14117160IPR003441NAC domain
PfamPF023651.4E-2419143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAGVSRETQM SIEASSMFPG FRFSPTDVEL ISYYLKKKME GAEKCVEVIS EVEICSHEPW  60
DLPAAKAVIQ SENEWFFFSA RGRKYPNGTQ SRRATELGYW KATGKERNVK SGSDVIGTKR  120
TLVFHIGRAP KGERTEWIMH EYCMHGKPQD SLVVCRLRRN VEFRPNDNSN RNSLNRRQLS  180
ASDGGIERTG MSEGDKRAEC SRKCSSSYDS HSIEQIDSAS ESDQKLSNEA PLAESSCQQQ  240
DSDKEEDFYA DILKDDIVKL DETPFSEAQE LLPFIAGKAE TQAQAQMQQP MGIIVSQAIP  300
PNSIASQGIA NRRIKLKRQA PPAADAEPSG SGKEEESPKC VVSMAKHRPI FIVFIILTLL  360
ALLASWLWGS LHTKRMTYGI LYKAFWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-381615916164NO APICAL MERISTEM PROTEIN
1ut4_B9e-381615916164NO APICAL MERISTEM PROTEIN
1ut7_A9e-381615916164NO APICAL MERISTEM PROTEIN
1ut7_B9e-381615916164NO APICAL MERISTEM PROTEIN
3swm_A9e-381615919167NAC domain-containing protein 19
3swm_B9e-381615919167NAC domain-containing protein 19
3swm_C9e-381615919167NAC domain-containing protein 19
3swm_D9e-381615919167NAC domain-containing protein 19
3swp_A9e-381615919167NAC domain-containing protein 19
3swp_B9e-381615919167NAC domain-containing protein 19
3swp_C9e-381615919167NAC domain-containing protein 19
3swp_D9e-381615919167NAC domain-containing protein 19
3ulx_A8e-3831572165Stress-induced transcription factor NAC1
4dul_A9e-381615916164NAC domain-containing protein 19
4dul_B9e-381615916164NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310317NRRIKLKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30055.m001612
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015577653.10.0NAC domain-containing protein 40
SwissprotQ9XIN73e-95NAC40_ARATH; NAC domain-containing protein 40
TrEMBLB9SCY90.0B9SCY9_RICCO; Transcription factor, putative
STRINGXP_002523858.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.17e-96NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]