PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30056.m000858
Common NameRCOM_1284760
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 177aa    MW: 19607.4 Da    PI: 10.3484
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30056.m000858genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.82.4e-1095167987
                    HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
             B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     ++ sg + +p +f++++++++++++tl++++   r+W+vkl    + +r +l++G   F++ n++++gD+++F+l++ 
  30056.m000858  95 EAFPSGKIHVPLNFMAKCSNQSTTNVTLQVKN---RQWNVKL--ISYASRGILSAGRPAFAH-NNVQAGDVCIFELINA 167
                    567788899*********98877766666555...*******..666666689*******86.88**********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023627.3E-894167IPR003340B3 DNA binding domain
CDDcd100175.93E-1094167No hitNo description
SuperFamilySSF1019363.92E-897166IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-10100166IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MMLFVTRSLK EKSPVSSGQP LKKKKLENPT RQYKGTANTR VIIYSSGISI GNSEELNHEK  60
QNATGKKIIK GTYDEAANKL TENILQSGHQ VRLSEAFPSG KIHVPLNFMA KCSNQSTTNV  120
TLQVKNRQWN VKLISYASRG ILSAGRPAFA HNNVQAGDVC IFELINAAKG LDFEETW
Cis-element ? help Back to Top
SourceLink
PlantRegMap30056.m000858
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025012734.14e-88LOW QUALITY PROTEIN: B3 domain-containing transcription factor VRN1-like
TrEMBLB9RTD31e-129B9RTD3_RICCO; Uncharacterized protein
STRINGXP_002517002.11e-129(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369