PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30066.m000713
Common NameRCOM_1308980
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 189aa    MW: 21606.5 Da    PI: 9.8777
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30066.m000713genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-08131178455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR+riN+++  L++l+P +     k +  a +L   ++Y++sLq
  30066.m000713 131 SHSLAERVRRERINEKLRCLQDLVPGC----YKTMGMAVMLDVIINYVQSLQ 178
                    8*************************8....355888889999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.28E-10125182No hitNo description
SuperFamilySSF474595.76E-15125183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.205127177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14127182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-6131178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-8133183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGELTRDPQN LKSPFSEMKS SSSSSSYLLE IGNYNNQRPV FLDDDSNPSE FLAFSNHRQQ  60
QLPMNFADVN IQSFFSVSPP AVPTGTGSAN IQKFLQKHEG KKRKRKDDQK DLEKPKEVIH  120
VRAKRGQATD SHSLAERVRR ERINEKLRCL QDLVPGCYKT MGMAVMLDVI INYVQSLQNQ  180
IEVRITNHK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195103QKHEGKKRK
2100105KKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap30066.m000713
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014510.11e-103transcription factor bHLH75 isoform X1
TrEMBLB9SLX11e-139B9SLX1_RICCO; DNA binding protein, putative
STRINGXP_002526990.11e-139(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148131112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.12e-41bHLH family protein