PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30066.m000714
Common NameRCOM_1309300
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 304aa    MW: 34617.8 Da    PI: 5.6187
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30066.m000714genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-172471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll +++ ++G g+W+  a++ g++Rt+k+c++rw++yl
    30066.m000714 24 RGPWTLEEDTLLTHYISRHGEGRWNMLAKYAGLKRTGKSCRLRWLNYL 71
                     89********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.3991975IPR017930Myb domain
SMARTSM007176.3E-152373IPR001005SANT/Myb domain
PfamPF002496.0E-162471IPR001005SANT/Myb domain
SuperFamilySSF466897.99E-232599IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-232578IPR009057Homeodomain-like
CDDcd001671.17E-112671No hitNo description
PROSITE patternPS0017503948IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS500904.40372127IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.4E-779120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MKSGSPRVTK RMCNSSEEES ELRRGPWTLE EDTLLTHYIS RHGEGRWNML AKYAGLKRTG  60
KSCRLRWLNY LKPDIKRGNL TPQEQLLILE LHSKWGNRVQ RQARQMNIES NSKRFLDAVR  120
CFWMPRLLQK VEQTSFSTAS LTNPDYLQTI SATSSLSVPN FTTNPSSSES FDPQIHKLVQ  180
YCSNLGSEHS ISSVTTSPST TVLSTDSIAI QHQPEILENP KTPPVLDDTG VYNYNNLILS  240
EGYHVESNGY DMDHGLNPAA ASMPEIGTFD DSLSECQMAE SNWVFEDEMA NALWNMDDIW  300
QFRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-142113124128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30066.m000714
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347383e-43KM034738.1 Jatropha curcas clone JcMYB119 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579560.10.0transcription factor MYB62
TrEMBLB9SLX20.0B9SLX2_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002526991.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-68myb domain protein 62