PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30066.m000750
Common NameRCOM_1311460
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 260aa    MW: 28845 Da    PI: 10.0678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30066.m000750genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.82.9e-1199146254
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    r+     ErrRR+ri++++  L el+P++      K + a+ Le A++Y+k L
  30066.m000750  99 RTRSATYERRRRNRIREKLKALGELIPHC-----HKQDTASLLEAAIDYLKAL 146
                    6666778*********************9.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-1595155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-1696173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.30797146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-999146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-12103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MVPHCSPADP NLFNNNIRLE TDSDNDNIFR SLSDIQSIPF LQQQGSPTTC QFTPLLLCHE  60
ESSASSKTKS TETRLIFQDI SRGIPGALKT NKLGQNHRRT RSATYERRRR NRIREKLKAL  120
GELIPHCHKQ DTASLLEAAI DYLKALKLQV EMMSNMGGGA LCQASSMSAA HYFCPVMPMD  180
PTSATRMFST SQYVGALMVP PPSVHPHFQL HPSSLPATAQ FRQPFIFSLP LLGAAISTPL  240
STASSYQGQS TTSRKQKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMap30066.m000750
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579556.13e-36uncharacterized protein LOC8271500
TrEMBLB9SM080.0B9SM08_RICCO; Uncharacterized protein
STRINGXP_002527027.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.43e-11phytochrome interacting factor 3-like 6