PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30066.m000752
Common NameRCOM_1311480
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 243aa    MW: 26987.7 Da    PI: 9.257
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30066.m000752genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.2e-1387131554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     n+ ErrRRdri++++  Lrel+P++      K + a++L  A++Y+k L
  30066.m000752  87 RNIYERRRRDRIRDKMKSLRELIPHC-----HKQDRASMLDDAINYLKAL 131
                    6999*********************9.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.11E-467132No hitNo description
PROSITE profilePS5088815.68882131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-1087131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1587139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-1587144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-1488137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
METDSSLDIF GSLSEIQSLP YLHQASPTNT NHDQFLPILC GEKSSASSKR KSIETHDDHY  60
DDIGGISGEP RRNKNHRNRK RISADMRNIY ERRRRDRIRD KMKSLRELIP HCHKQDRASM  120
LDDAINYLKA LKLHVEMLAN MGGRGALCQA PSSPAATPYF CPVIQTNSTS EMRMFSTSLD  180
CQAPPPSFGL HLQLQPSSLP APPPLQQISP LLLFPRLPLL GAATSTPLLI ASSSHGHSAT  240
SQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17894RKRISADMRNIYERRRR
29095ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMap30066.m000752
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579556.11e-129uncharacterized protein LOC8271500
TrEMBLB9SM101e-178B9SM10_RICCO; Uncharacterized protein
STRINGXP_002527029.11e-178(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.12e-13bHLH family protein