PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30068.m002516
Common NameRCOM_1311830
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ARF
Protein Properties Length: 694aa    MW: 77446 Da    PI: 6.5539
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30068.m002516genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.62.8e-24128228198
                    EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                    f+kvlt sd++++g +++ +k+a+e+     + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++e
  30068.m002516 128 FCKVLTASDTSTHGGFSVLRKHATEClpqldMTQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENGE 221
                    99****************************9666667789************************************************..449999 PP

                    .EEEEE- CS
             B3  92 lvvkvfr 98 
                    l+v+v+r
  30068.m002516 222 LRVGVRR 228
                    *****98 PP
2Auxin_resp106.43.2e-35254333183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    a+ha++t++ F v+Y+Pr+  s+F+++++k+++a+++k+svGmRfkm+fe+eds+err+sGt+vgv+d++p +W +SkWr+Lk
  30068.m002516 254 ASHAVATQTLFVVYYKPRT--SQFIISLNKYLEAINNKFSVGMRFKMRFEGEDSPERRFSGTIVGVEDFSP-HWLDSKWRQLK 333
                    789***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-40121243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-39123257IPR015300DNA-binding pseudobarrel domain
CDDcd100174.75E-21126228No hitNo description
PfamPF023622.5E-22128228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.238128230IPR003340B3 DNA binding domain
SMARTSM010191.4E-22128230IPR003340B3 DNA binding domain
PfamPF065071.8E-32254333IPR010525Auxin response factor
PfamPF023094.7E-7564618IPR033389AUX/IAA domain
SuperFamilySSF542771.96E-14576658No hitNo description
PROSITE profilePS5174526.893582663IPR000270PB1 domain
PfamPF023096.4E-7628669IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MAANRVGSFS QGNSEGSCGD DLYTELWKAC AGPLVDVPKD GERVFYFPQG HMEQLEASTN  60
QELNQRVPLF NLPSKILCRV INIHLLAEQD TDEVYAQITL LPESDQTEPT SPDPSPAEPS  120
RRPAVHSFCK VLTASDTSTH GGFSVLRKHA TECLPQLDMT QPTPTQELVA KDLHGYEWRF  180
KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD SFVFLRGENG ELRVGVRRLA RQQSSMPSSV  240
ISSQSMHLGV LATASHAVAT QTLFVVYYKP RTSQFIISLN KYLEAINNKF SVGMRFKMRF  300
EGEDSPERRF SGTIVGVEDF SPHWLDSKWR QLKVQWDEPA SIPRPDKVSP WEIEPFSASA  360
PSNISQPVPL KNKRPRPPIE VPTLDLSSTA SPLWNSRLTQ SHDLTQLSVT AEGKRNENHI  420
MWHHKQNDIN SHSNSISRTQ TEGGWLSSPL VNVSQHLFQE VTEDSKSVSN WPVVSGYSTP  480
QSSKLNDSIL DPVEKGRKSD VATSYRLFGI ELINHSASSL PTEKAPAQPL SVSSGTTEAH  540
VVSTLSAADS DQKSDISKER KPEQLHVSPK DAQSRQSSAS TRSRTKVQMQ GVAVGRAIDL  600
TMIKGYNQLL DELEEMFDIK GQLHPRDKWE IVYTDDEGDM MLVGDDPWPE FCNMVRRIFI  660
CSSQDVKKMM PGSKLPMFST EGEGTVISSD SADN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-17813621361Auxin response factor 1
4ldw_A1e-17813621361Auxin response factor 1
4ldw_B1e-17813621361Auxin response factor 1
4ldx_A1e-17813621361Auxin response factor 1
4ldx_B1e-17813621361Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372376KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30068.m002516
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518850.20.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLB9RYN10.0B9RYN1_RICCO; Auxin response factor
STRINGXP_002518850.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9