PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30068.m002581
Common NameLOC8288847, RCOM_1313580
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 479aa    MW: 53910.1 Da    PI: 6.4209
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30068.m002581genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-13305350454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er+RR+r+N++f  Lr+++P+       K++Ka+ L  Av YI++L
  30068.m002581 305 NHVEAERQRRERLNNRFYALRSVVPNV-----SKMDKASLLADAVTYIQEL 350
                    799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-5125207IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.22E-14300354No hitNo description
SuperFamilySSF474591.7E-18300365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.326301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-11305350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-18305366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-17307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00113425478No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MEEIMSNFPS SASMISFCQE SLPPLQQRLQ YILQSRPEWW VYAIFWQASK EPNGRLVLSW  60
GDGDFRDSKG LAVKPSNNKQ NQLKYGFNLE RKKVTRDFQS LFGDEMDLER LADADVTNYG  120
WFYTVSVTQS FNVGEGILGQ TFGSGTFTWL TGDHELQLYE CGRVKEARMH GIQTLVCIAT  180
STGVVELGSS NMINEDWSLV QLCKSLFVQD VTCLIPKQPR PEAQLQIPDR SASVLDIGMF  240
SGCQKQASPE THNEGDIKKD ATNDLGRSSS DSGPFDSDGN FAVESTDRIK KRGRKPVKGK  300
ELPLNHVEAE RQRRERLNNR FYALRSVVPN VSKMDKASLL ADAVTYIQEL KAKVDELKTQ  360
VQLVSKKSKI SGNNVFDNNS TSSMIDRHLM TSSIYRAKEM EVDVRIVGSE AMIRVRSPDI  420
DYPAARLMNA IRELEFQVHH ASISSIKDVV LQDIVVSIRD GLTSEEVVRT AIIQSLMQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-30242078192Transcription factor MYC3
4rqw_B8e-30242078192Transcription factor MYC3
4rs9_A8e-30242078192Transcription factor MYC3
4yz6_A8e-30242078192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310315RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMap30068.m002581
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518914.10.0transcription factor MYC2
TrEMBLB9RYU50.0B9RYU5_RICCO; DNA binding protein, putative
STRINGXP_002518914.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-59bHLH family protein