PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30068.m002623
Common NameRCOM_1314900
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 363aa    MW: 38853.5 Da    PI: 6.9532
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30068.m002623genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.8e-1852101255
            AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    ++ G+r+++ +grWvAeI+d      ++ r +lg+f+taeeAa+a++ a+++l+g
  30068.m002623  52 RFVGIRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEEAARAYDDAARALRG 101
                    689******.7*********....4456*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-3552115IPR001471AP2/ERF domain
PROSITE profilePS5103220.41552109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-2852109IPR001471AP2/ERF domain
CDDcd000181.15E-1852109No hitNo description
PfamPF008473.2E-1252101IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1953110IPR016177DNA-binding domain
PRINTSPR003679.0E-85364IPR001471AP2/ERF domain
PRINTSPR003679.0E-87591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MKSADTVSGE HQYKKTRPFT LVRFDLVAGG SMGAPTDGLR GRRKSSSRGH HRFVGIRQRP  60
SGRWVAEIKD SLQKVRLWLG TFDTAEEAAR AYDDAARALR GDNARTNFEL PQSTSNSGGA  120
RAGLADNIEP FSFEDVCGTG TEAEGILGAL KAKLLDGKGL RVLPPANCDP AVQPGAGAVA  180
STTHNNSVRR ELASASDHIV WHGIGTLNPL QVSSNPGYCK ADLLIDHGNM VTGHVPAQLH  240
LKTAGRTNLV WSNVPAYEGA WPTQVNHIPE SAPFVSGATT TTTGTWQLAG ATEPTTDMGY  300
CTVQMPTSSI PKMDATSMRM PHMDGAEEVV WSAEQQLMHC ENSGWTGANA SWDPFLYVSS  360
VLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-14501081271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30068.m002623
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518956.30.0uncharacterized protein LOC8278484
TrEMBLB9RYY70.0B9RYY7_RICCO; Uncharacterized protein
STRINGXP_002518956.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-17related to AP2 11