PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30068.m002635

Common Name

LOC8278496, RCOM_1315120

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Trihelix

Protein Properties

Length: 741aa MW: 81479.4 Da PI: 5.0473

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30068.m002635	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.2	3e-30	81	165	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+ aL+++r++m+ ++r++ k+plWe+vs+k+ e g++rs+k+Ckek+en++k+yk++keg+++r ++ +t+++f+qlea 30068.m002635 81 RWPRQETIALLQIRSDMDAAFRDATVKGPLWEDVSRKLNELGYKRSAKKCKEKFENVHKYYKRTKEGRGGR--QDGKTYRFFTQLEA 165 8******************************************************************98..56667*****85 PP
2	trihelix	106.8	1.4e-33	471	556	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a 30068.m002635 471 RWPKAEVLALIKLRSGLEFRYQEAGPKGPLWEEISAGMQRMGYKRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 556 8*******************************************************************8.99999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.504	74	138	IPR017877	Myb-like domain
SMART	SM00717	0.0073	78	140	IPR001005	SANT/Myb domain
CDD	cd12203	9.56E-27	80	145	No hit	No description
Pfam	PF13837	5.1E-20	80	166	No hit	No description
PROSITE profile	PS50090	6.853	464	528	IPR017877	Myb-like domain
SMART	SM00717	0.0022	468	530	IPR001005	SANT/Myb domain
Pfam	PF13837	3.0E-23	470	557	No hit	No description
CDD	cd12203	1.33E-30	471	535	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence Send to blast
MQQGGGDPTQ SPYGLPSVTM TTHMLVSAAV DQQQQQLVEE ASPISSRPPA TTGGNLDDFM 60 RLSGSAADED ELADRATSGN RWPRQETIAL LQIRSDMDAA FRDATVKGPL WEDVSRKLNE 120 LGYKRSAKKC KEKFENVHKY YKRTKEGRGG RQDGKTYRFF TQLEALHNTT GATINIVSPS 180 QPISTAATTA TTTLDVSPVS IGIPMPAVSS VRNYPPSTVG ISTIFPAVTA PLPPPPPPPR 240 AGISFSSTSN GSSSSPSFQD DDDDDDDDDE PSNIAAGSSR KRKRHSSEGG TRRMMDFFEG 300 LMKHVMQKQE AMQQRFLDAI EKRENDRVVR EEAWKRQEMA RLSREHELMA QERAISASRD 360 AAIVSFIQKI TGQTIQLPSP VTIPAVLQPP PAPQSKPVPL APIVTVSIQQ PPLPQPPSAA 420 APPPPQQQDK HQVHRHHDRQ SSISSELAIG VAEGMPQEIG SSRSLEPSSS RWPKAEVLAL 480 IKLRSGLEFR YQEAGPKGPL WEEISAGMQR MGYKRSAKRC KEKWENINKY FKKVKESNKK 540 RPEDAKTCPY FHELDALYRK KVLVTTAGGG TISTSGFANQ ITRPEQQQQQ ESTKPDDRTE 600 ASATLLPAQS SQSQAKGGSG ADANTGLPGN LFGEGNAGAG NKPEDIVKEL IQPQGPQKQQ 660 ESQFTVHDYE KMEEDDDSDI DHENDEDDVE ELDLEDDEEE DDDEVQEEER KMAYKIEYQR 720 PNTSASNGGG NGAPSILAMV Q

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence Send to blast

MQQGGGDPTQ SPYGLPSVTM TTHMLVSAAV DQQQQQLVEE ASPISSRPPA TTGGNLDDFM  60
RLSGSAADED ELADRATSGN RWPRQETIAL LQIRSDMDAA FRDATVKGPL WEDVSRKLNE  120
LGYKRSAKKC KEKFENVHKY YKRTKEGRGG RQDGKTYRFF TQLEALHNTT GATINIVSPS  180
QPISTAATTA TTTLDVSPVS IGIPMPAVSS VRNYPPSTVG ISTIFPAVTA PLPPPPPPPR  240
AGISFSSTSN GSSSSPSFQD DDDDDDDDDE PSNIAAGSSR KRKRHSSEGG TRRMMDFFEG  300
LMKHVMQKQE AMQQRFLDAI EKRENDRVVR EEAWKRQEMA RLSREHELMA QERAISASRD  360
AAIVSFIQKI TGQTIQLPSP VTIPAVLQPP PAPQSKPVPL APIVTVSIQQ PPLPQPPSAA  420
APPPPQQQDK HQVHRHHDRQ SSISSELAIG VAEGMPQEIG SSRSLEPSSS RWPKAEVLAL  480
IKLRSGLEFR YQEAGPKGPL WEEISAGMQR MGYKRSAKRC KEKWENINKY FKKVKESNKK  540
RPEDAKTCPY FHELDALYRK KVLVTTAGGG TISTSGFANQ ITRPEQQQQQ ESTKPDDRTE  600
ASATLLPAQS SQSQAKGGSG ADANTGLPGN LFGEGNAGAG NKPEDIVKEL IQPQGPQKQQ  660
ESQFTVHDYE KMEEDDDSDI DHENDEDDVE ELDLEDDEEE DDDEVQEEER KMAYKIEYQR  720
PNTSASNGGG NGAPSILAMV Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	131	KRSAKKCKE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30068.m002635

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002518968.1	0.0	trihelix transcription factor GTL1 isoform X1
Swissprot	Q39117	9e-68	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	B9RYZ9	0.0	B9RYZ9_RICCO; Transcription factor, putative
STRING	XP_002518968.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	6e-53	GT-2-like 1

Link Out ? help Back to Top
Phytozome	30068.m002635
Entrez Gene	8278496