PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30068.m002661
Common NameLOC8278522, RCOM_1316780
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 405aa    MW: 43100.3 Da    PI: 6.5258
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30068.m002661genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.32.9e-22301363163
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN  L++e++++k e+++l +e+
  30068.m002661 301 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENANLRSEVNRIKSEYEQLLAEN 363
                    89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.3E-30197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165964.8E-55136268No hitNo description
Gene3DG3DSA:1.20.5.1702.6E-17294359No hitNo description
SMARTSM003385.1E-21301365IPR004827Basic-leucine zipper domain
PfamPF001704.3E-20301363IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.334303366IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-10304360No hitNo description
CDDcd147022.15E-24306356No hitNo description
PROSITE patternPS000360308323IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGSSDMDKTA KEKESKTQPP TTTQEQSSAT TTGTVNPDWT GFQAYSPIPP HGFVASSPQA  60
HPYMWGVQPI MPPYGTPPHP YVAMYPHSGI YAHPSIPPGS YPFSPFAMPS PNGIAEASGY  120
TPGNTEPDGK PSDVKEKLPI KRSKGSLGSL NMITGKNNEL GKTSGASANG AYSKSAESGS  180
EGTSEGSDAN SQNDSQMKSG GRQDSEDASQ NGGSAHGLQN GGQANTVMNQ TMSIVPISAT  240
GAPGALPGPA TNLNIGMDYW GATSSAIPAI RGKVPSTPVA GGVVTPGSRD AVQSQLWLQD  300
ERELKRQRRK QSNRESARRS RLRKQAECDE LAQRAEALKE ENANLRSEVN RIKSEYEQLL  360
AENASLKERL GEIPGNDDLR ASRNDQHLSN DTQKTEQTEI VQAGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317323RRSRLRK
2317324RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30068.m002661
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518994.10.0bZIP transcription factor 16
RefseqXP_025013063.10.0bZIP transcription factor 16
RefseqXP_025013064.10.0bZIP transcription factor 16
SwissprotQ501B21e-174BZP16_ARATH; bZIP transcription factor 16
TrEMBLB9RZ250.0B9RZ25_RICCO; DNA-binding protein EMBP-1, putative
STRINGXP_002518994.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-156basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]