PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30068.m002670

Common Name

LOC8278531, RCOM_1316970

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

BBR-BPC

Protein Properties

Length: 230aa MW: 25088.8 Da PI: 10.5814

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30068.m002670	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	252.4	2.9e-77	37	230	105	301
GAGA_bind 105 tksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskkkvkkesad.erskaekksidlvl 198 t+si+s +q++++ +++ + a+ e a+++++ +k k+r+++ ++k +++ +k+ k ++++k++kk++++ +++k+ek++i++ + 30068.m002670 37 TNSIHSQG----SQIDEPILPVPPIC-SIAPAAEPAKNNNSGAKPAKARKQKPSAKGSNQIpSKTFKLKQPRKTSKKKGQSmPEAKREKRNINVDI 127 44444322....46666666644433.333333333333333343443333333333333323333445556666666666689********** PP GAGA_bind 199 ngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGt 294 +++D s++P P CsCtG++r+CYkWG+GGWqS+CCtt+iS yPLP+s+ r+gaR+agrKmS+ga+ klL kLaaeGydls+pvDLk+hWA+HGt 30068.m002670 128 GRMNFDLSGVPSPFCSCTGMPRVCYKWGAGGWQSSCCTTNISEYPLPMSAARPGARMAGRKMSNGAYLKLLLKLAAEGYDLSHPVDLKEHWARHGT 223 ******************************************************************************************** PP GAGA_bind 295 nkfvtir 301 nkfvti+ 30068.m002670 224 NKFVTIK 230 ****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	3.5E-80	16	230	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.7E-68	70	230	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MGTYSNRNHL IPEASTGASL PHFAWFYPGS FYSAPKTNSI HSQGSQIDEP ILPVPPICSI 60 APAAEPAKNN NSGAKPAKAR KQKPSAKGSN QIPSKTFKLK QPRKTSKKKG QSMPEAKREK 120 RNINVDIGRM NFDLSGVPSP FCSCTGMPRV CYKWGAGGWQ SSCCTTNISE YPLPMSAARP 180 GARMAGRKMS NGAYLKLLLK LAAEGYDLSH PVDLKEHWAR HGTNKFVTIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30068.m002670

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002519003.1	1e-172	protein BASIC PENTACYSTEINE7
Refseq	XP_015574533.1	1e-172	protein BASIC PENTACYSTEINE7
Refseq	XP_015574534.1	1e-172	protein BASIC PENTACYSTEINE7
Swissprot	O82286	2e-69	BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBL	B9RZ34	1e-170	B9RZ34_RICCO; Uncharacterized protein
STRING	XP_002519003.1	1e-171	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16430	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	4e-67	basic pentacysteine 7

Link Out ? help Back to Top
Phytozome	30068.m002670
Entrez Gene	8278531